From 0bf33ccf430f82965c0e89b84a5912f755c2f452 Mon Sep 17 00:00:00 2001
From: WardDeb <ward@deboutte.be>
Date: Fri, 7 Nov 2025 12:29:36 +0100
Subject: [PATCH 1/2] fix source install from path

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 1b0bf1c..d291a18 100644
--- a/README.md
+++ b/README.md
@@ -17,7 +17,7 @@ The provided packages should be used where possible. We understand that some use
 ```bash
 git clone https://github.com/nanoporetech/modkit.git
 cd modkit
-cargo install --path .
+cargo install --path modkit
 # or
 cargo install --git https://github.com/nanoporetech/modkit.git
 ```

From e8efee9bc7ca61e66d8f24f78f8a03843f3a7baa Mon Sep 17 00:00:00 2001
From: WardDeb <ward@deboutte.be>
Date: Fri, 7 Nov 2025 13:26:14 +0100
Subject: [PATCH 2/2] allow header in bedmethyl files for bigwig creation

---
 modkit-core/src/bedmethyl_util/mod.rs | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/modkit-core/src/bedmethyl_util/mod.rs b/modkit-core/src/bedmethyl_util/mod.rs
index c28197d..f2d388a 100644
--- a/modkit-core/src/bedmethyl_util/mod.rs
+++ b/modkit-core/src/bedmethyl_util/mod.rs
@@ -39,6 +39,9 @@ impl<R: BufRead> BedMethylStream<R> {
             if b == 0 {
                 break;
             }
+            if buf.trim_start().starts_with('#') {
+                continue;
+            }
             let bm_record = BedMethylLine::parse(&buf)?;
             let keep = mod_codes.contains(&bm_record.raw_mod_code);
             if keep {