pubget/pyproject.toml at main · neuroquery/pubget · GitHub

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[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[project]
name = "pubget"
dynamic = ["version"]
description = "Download neuroimaging articles and extract text and stereotactic coordinates."
readme = "README.md"
requires-python = ">=3.10"
license-files = ["COPYING"]
authors = [
    {name = "Jérôme Dockès", email = "jerome@dockes.org"},
    {name = "Alejandro de la Vega", email = "delavega@utexas.edu"}
]
keywords = ["neuroimaging", "meta-analysis", "text-mining"]
classifiers = [
    "License :: OSI Approved :: MIT License",
    "Intended Audience :: Science/Research",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3",
    "Topic :: Scientific/Engineering",
    "Topic :: Software Development :: Libraries",
]
dependencies = [
    "joblib (>=1.1.1)",
    "lxml",
    "neuroquery",
    "numpy (>=1.23.5)",
    "pandas (>=1.5.3)",
    "requests",
    "scikit-learn (>=1.2.1)",
    "scipy (>=1.9.3)",
]

[project.urls]
Documentation = "https://neuroquery.github.io/pubget/"
"Source code" = "https://github.com/neuroquery/pubget"

[project.optional-dependencies]
dev = [
    "coverage",
    "flake8",
    "mypy",
    "pdoc",
    "pylint",
    "pytest",
    "pytest-cov",
    "types-requests",
    "black",
    "isort",
]
nimare = [
    "nimare",
]

[tool.hatch.version]
path = "src/pubget/_data/VERSION"
pattern = "^(?P<version>.*)$"

[tool.mypy]
warn_return_any = true
warn_unused_configs = true
warn_unreachable = true
disallow_untyped_defs = true

[[tool.mypy.overrides]]
module = ["joblib.*", "sklearn.*", "lxml.*", "scipy.*", "pandas.*", "neuroquery.*", "nimare.*", "nibabel.*", "nilearn.*"]
ignore_missing_imports = true

[tool.black]
line-length = 79
extend-exclude = '/(_data|data)/'

[tool.isort]
profile = "black"
extend_skip = ["data", "_data"]
skip_gitignore = true
line_length = 79

[project.scripts]
pubget = "pubget._commands:pubget_command"

[tool.pixi.project]
channels = ["conda-forge"]
platforms = ["linux-64", "osx-arm64", "osx-64", "win-64"]

[tool.pixi.dependencies]
joblib = ">=1.1.1"
lxml = "*"
numpy = ">=1.23.5"
pandas = ">=1.5.3"
requests = "*"
scikit-learn = ">=1.2.1"
scipy = ">=1.9.3"

[tool.pixi.pypi-dependencies]
pubget = { path = ".", editable = true }

[tool.pixi.feature.test.dependencies]
pytest = "*"
pytest-cov = "*"
coverage = "*"

[tool.pixi.feature.test.tasks]
test = { cmd = "pytest -vsl --cov=pubget tests" }

[tool.pixi.feature.plugin.pypi-dependencies]
pubget_example_plugin = { path = "docs/example_plugin" }

[tool.pixi.feature.plugin.tasks]
run_plugin = { cmd = "python docs/example_plugin/tests/run_plugin.py" }

[tool.pixi.feature.min-dependencies.dependencies]
joblib = "==1.1.1"
lxml = "*"
numpy = "==1.23.5"
pandas = "==1.5.3"
requests = "*"
scikit-learn = "==1.2.1"
scipy = "==1.9.3"

[tool.pixi.feature.optional-dependencies.pypi-dependencies]
# TODO fix version conflicts
# nimare = "*"

[tool.pixi.feature.py310.dependencies]
python = "~=3.10.0"

[tool.pixi.feature.py311.dependencies]
python = "~=3.11.0"

[tool.pixi.feature.py313.dependencies]
python = "~=3.13.0"

[tool.pixi.environments]
py310-min-deps = ["py310", "min-dependencies", "test"]
py311-optional-deps = ["py311", "optional-dependencies", "test"]
py313-latest-deps = ["py313", "test"]
plugin = ["py313", "plugin"]