Update pixi lockfile #332
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| name: Tests, Package, and Deployment | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| push: | |
| branches: [next, qa, main] | |
| tags: ["v*"] | |
| # cancel previous job if new commit is pushed | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| PKG_NAME: refred | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-24.04 | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v7 | |
| - name: Setup Pixi | |
| uses: prefix-dev/setup-pixi@a09b6247153796b190642a2b53fac4241043cf6f # v0.10.0 | |
| - name: mypy type annotations | |
| run: pixi run mypy src/${{ env.PKG_NAME }} test | |
| - name: Unit test with code coverage | |
| run: pixi run test -vv --cov=${{ env.PKG_NAME }} --cov-report=xml --cov-report=term | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v7 | |
| with: | |
| verbose: true | |
| token: ${{ secrets.CODECOV_TOKEN }} # required | |
| build: | |
| runs-on: ubuntu-24.04 | |
| permissions: | |
| contents: read # for actions/checkout | |
| security-events: write # for github/codeql-action/upload-sarif to upload results | |
| actions: read # for upload-sarif to read run status (private repos) | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v7 | |
| with: | |
| fetch-depth: 100 | |
| fetch-tags: true | |
| ref: ${{ github.ref }} | |
| - name: Setup Pixi | |
| uses: prefix-dev/setup-pixi@a09b6247153796b190642a2b53fac4241043cf6f # v0.10.0 | |
| - name: Build Conda package | |
| run: | | |
| pixi run conda-build | |
| # Copy conda package to workspace root so it can be uploaded as an artifact. | |
| find local-channel -name "*.conda" -exec cp {} . \; | |
| # pkg-verify requires a conda env that already has the package | |
| # installed (and micromamba on PATH); pkg-install sets both up. | |
| - name: Install built conda package | |
| id: install | |
| uses: neutrons/gh-actions/pkg-install@eb7a7c6fcfd0cda1a7b238329afc0afd09a4f4af # v2 | |
| with: | |
| package-name: ${{ env.PKG_NAME }} | |
| local-channel: ./local-channel | |
| extra-channels: neutrons mantid | |
| - name: Verify Conda Package | |
| uses: neutrons/gh-actions/pkg-verify@eb7a7c6fcfd0cda1a7b238329afc0afd09a4f4af # v2 | |
| with: | |
| package-name: ${{ env.PKG_NAME }} | |
| conda-env-name: ${{ steps.install.outputs.conda-env }} | |
| extra-commands: python -c "import lr_reduction; import mantid; import qtpy; import configobj" | |
| # Audit the dependencies of the conda package we just installed. SARIF | |
| # results are uploaded to GitHub code scanning by the grype action. | |
| - name: Scan installed environment with Grype | |
| uses: neutrons/gh-actions/grype@eb7a7c6fcfd0cda1a7b238329afc0afd09a4f4af # v2 | |
| with: | |
| path: ${{ steps.install.outputs.conda-install-dir }} | |
| - name: Upload conda package as artifact | |
| uses: actions/upload-artifact@v7 | |
| with: | |
| name: artifact-conda-package | |
| path: ${{ env.PKG_NAME }}-*.conda | |
| publish: | |
| runs-on: ubuntu-24.04 | |
| needs: [tests, build] | |
| if: startsWith(github.ref, 'refs/tags/v') || github.ref == 'refs/heads/next' | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v7 | |
| with: | |
| ref: ${{ github.ref }} | |
| - name: Setup Pixi | |
| uses: prefix-dev/setup-pixi@a09b6247153796b190642a2b53fac4241043cf6f # v0.10.0 | |
| - name: Download conda package artifact | |
| uses: actions/download-artifact@v8 | |
| with: | |
| name: artifact-conda-package | |
| - name: Upload package to anaconda | |
| uses: neutrons/gh-actions/publish@eb7a7c6fcfd0cda1a7b238329afc0afd09a4f4af # v2 | |
| with: | |
| anaconda-token: ${{ secrets.ANACONDA_TOKEN }} | |
| organization: neutrons | |
| package-path: ${{ env.PKG_NAME }}-*.conda | |
| - name: Remove old packages | |
| if: github.ref == 'refs/heads/next' | |
| uses: neutrons/gh-actions/pkg-remove@eb7a7c6fcfd0cda1a7b238329afc0afd09a4f4af # v2 | |
| with: | |
| anaconda-token: ${{ secrets.ANACONDA_TOKEN }} | |
| organization: neutrons | |
| package-name: ${{ env.PKG_NAME }} | |
| label: ${{ env.CONDA_LABEL }} | |
| keep: 5 | |
| # Trigger GitLab dev deploy pipeline | |
| deploy-dev: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| if: github.ref == 'refs/heads/next' | |
| steps: | |
| - name: Get Environment Name | |
| uses: neutrons/branch-mapper@main | |
| id: env_name | |
| with: | |
| prefix: refred | |
| - name: Trigger Dev Deploy | |
| uses: eic/trigger-gitlab-ci@v3.3 | |
| id: trigger | |
| with: | |
| url: https://code.ornl.gov | |
| project_id: 19060 | |
| ref_name: main | |
| token: ${{ secrets.GITLAB_DEPLOY_TOKEN }} | |
| - name: Annotate commit | |
| uses: peter-evans/commit-comment@v4 | |
| with: | |
| body: | | |
| GitLab pipeline for ${{ steps.env_name.outputs.name }} has been submitted for this commit: ${{ steps.trigger.outputs.web_url }} |