diff --git a/pixi.lock b/pixi.lock
index d02f8cbdb..07e4042e7 100644
--- a/pixi.lock
+++ b/pixi.lock
@@ -6,43 +6,45 @@ environments:
     - url: https://prefix.dev/pixi-build-backends/
     indexes:
     - https://pypi.org/simple
-    options:
-      pypi-prerelease-mode: if-necessary-or-explicit
     packages:
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@@ -52,23 +54,24 @@ environments:
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+      - conda: https://conda.anaconda.org/conda-forge/linux-64/contourpy-1.3.3-py314h97ea11e_4.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/coverage-7.13.1-py314h67df5f8_0.conda
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-      - conda: https://conda.anaconda.org/conda-forge/noarch/filelock-3.20.0-pyhd8ed1ab_0.conda
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       - conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2
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@@ -76,67 +79,73 @@ environments:
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+  sha256: a9d220022002611515de26be256a08abcf046bf8e66a7d95d22cdef0842b0f84
+  md5: 28a77c52c425fa9c6d914c609c626b1a
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   - libcxx >=19
   - __osx >=10.13
-  - python_abi 3.12.* *_cp312
+  - python_abi 3.14.* *_cp314
   license: BSD-3-Clause
   license_family: BSD
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-  size: 69024
-  timestamp: 1762488958152
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-- conda: https://conda.anaconda.org/conda-forge/win-64/kiwisolver-1.4.9-py313h1a38498_2.conda
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-  md5: f77249adfa3f0091e016610346affd09
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   - ucrt >=10.0.20348.0
-  - python_abi 3.13.* *_cp313
+  - python_abi 3.14.* *_cp314
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   license_family: BSD
   purls:
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-  size: 73825
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 - conda: https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.3-h659f571_0.conda
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+  - libgcc >=14
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+  - libjpeg-turbo >=3.1.2,<4.0a0
+  - libtiff >=4.7.1,<4.8.0a0
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   - ucrt >=10.0.20348.0
-  - vc >=14.2,<15
-  - vc14_runtime >=14.29.30139
+  - vc >=14.3,<15
+  - vc14_runtime >=14.44.35208
   license: MIT
   license_family: MIT
   purls: []
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.45-default_hbd61a6d_104.conda
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-  md5: a6abd2796fc332536735f68ba23f7901
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+- conda: https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.45-default_hbd61a6d_105.conda
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   - zstd >=1.5.7,<1.6.0a0
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   license_family: GPL
   purls: []
-  size: 725545
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 - conda: https://conda.anaconda.org/conda-forge/linux-64/lerc-4.0.0-h0aef613_1.conda
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/libblas-3.11.0-2_h4a7cf45_openblas.conda
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-  md5: 6146bf1b7f58113d54614c6ec683c14a
+- conda: https://conda.anaconda.org/conda-forge/linux-64/libblas-3.11.0-5_h4a7cf45_openblas.conda
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   - mkl <2026
-  - libcblas   3.11.0   2*_openblas
-  - liblapack  3.11.0   2*_openblas
+  - liblapack  3.11.0   5*_openblas
+  - libcblas   3.11.0   5*_openblas
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+  - liblapacke 3.11.0   5*_openblas
   license: BSD-3-Clause
   license_family: BSD
   purls: []
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-- conda: https://conda.anaconda.org/conda-forge/osx-64/libblas-3.11.0-4_he492b99_openblas.conda
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+  - blas 2.305   openblas
+  - libcblas   3.11.0   5*_openblas
   - mkl <2026
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-  - libcblas   3.11.0   4*_openblas
-  - liblapacke 3.11.0   4*_openblas
-  - blas 2.304   openblas
+  - liblapacke 3.11.0   5*_openblas
   license: BSD-3-Clause
+  license_family: BSD
   purls: []
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libblas-3.11.0-4_h51639a9_openblas.conda
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-  - blas 2.304   openblas
-  - liblapack  3.11.0   4*_openblas
-  - liblapacke 3.11.0   4*_openblas
+  - libcblas   3.11.0   5*_openblas
+  - liblapack  3.11.0   5*_openblas
+  - liblapacke 3.11.0   5*_openblas
+  - blas 2.305   openblas
   - mkl <2026
   license: BSD-3-Clause
+  license_family: BSD
   purls: []
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-- conda: https://conda.anaconda.org/conda-forge/win-64/libblas-3.11.0-4_hf2e6a31_mkl.conda
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-  md5: 97ec87aab53fb310e6c19cde2eec1de2
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+  md5: f9decf88743af85c9c9e05556a4c47c0
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   constrains:
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-  - libcblas   3.11.0   4*_mkl
-  - liblapack  3.11.0   4*_mkl
-  - blas 2.304   mkl
+  - liblapack  3.11.0   5*_mkl
+  - libcblas   3.11.0   5*_mkl
+  - blas 2.305   mkl
+  - liblapacke 3.11.0   5*_mkl
   license: BSD-3-Clause
+  license_family: BSD
   purls: []
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-  timestamp: 1764824188313
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 - conda: https://conda.anaconda.org/conda-forge/linux-64/libbrotlicommon-1.2.0-hb03c661_1.conda
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.11.0-2_h0358290_openblas.conda
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+  - libblas 3.11.0 5_h4a7cf45_openblas
   constrains:
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-  - liblapacke 3.11.0   2*_openblas
-  - liblapack  3.11.0   2*_openblas
+  - liblapacke 3.11.0   5*_openblas
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   license: BSD-3-Clause
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-- conda: https://conda.anaconda.org/conda-forge/osx-64/libcblas-3.11.0-4_h9b27e0a_openblas.conda
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-  - liblapack  3.11.0   4*_openblas
-  - blas 2.304   openblas
+  - liblapack  3.11.0   5*_openblas
+  - blas 2.305   openblas
+  - liblapacke 3.11.0   5*_openblas
   license: BSD-3-Clause
+  license_family: BSD
   purls: []
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libcblas-3.11.0-4_hb0561ab_openblas.conda
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+  - libblas 3.11.0 5_h51639a9_openblas
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-  - blas 2.304   openblas
-  - liblapacke 3.11.0   4*_openblas
+  - liblapacke 3.11.0   5*_openblas
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   license: BSD-3-Clause
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+- conda: https://conda.anaconda.org/conda-forge/win-64/libcblas-3.11.0-5_h2a3cdd5_mkl.conda
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+  - libblas 3.11.0 5_hf2e6a31_mkl
   constrains:
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-  - liblapack  3.11.0   4*_mkl
-  - blas 2.304   mkl
+  - liblapack  3.11.0   5*_mkl
+  - liblapacke 3.11.0   5*_mkl
+  - blas 2.305   mkl
   license: BSD-3-Clause
+  license_family: BSD
   purls: []
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-- conda: https://conda.anaconda.org/conda-forge/osx-64/libclang-cpp19.1-19.1.7-default_hc369343_5.conda
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-  md5: 51c684dbc10be31478e7fc0e85d27bfe
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+- conda: https://conda.anaconda.org/conda-forge/osx-64/libclang-cpp19.1-19.1.7-default_hd70426c_7.conda
+  sha256: 3e8588828d2586722328ea39a7cf48c50a32f7661b55299075741ef7c8875ad5
+  md5: b671ac86f33848f3bc3a6066d21c37dd
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   license_family: Apache
   purls: []
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libclang-cpp19.1-19.1.7-default_h73dfc95_5.conda
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   depends:
   - libgcc >=15.2.0
   constrains:
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   license: GPL-3.0-only WITH GCC-exception-3.1
+  license_family: GPL
   purls: []
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   - libzlib >=1.3.1,<2.0a0
-  - pcre2 >=10.46,<10.47.0a0
+  - pcre2 >=10.47,<10.48.0a0
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+  - glib 2.86.3 *_0
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   purls: []
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-  - pcre2 >=10.46,<10.47.0a0
+  - pcre2 >=10.47,<10.48.0a0
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+  - glib 2.86.3 *_0
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-  - pcre2 >=10.46,<10.47.0a0
+  - pcre2 >=10.47,<10.48.0a0
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+  - glib 2.86.3 *_0
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+  md5: c2d5b6b790ef21abac0b5331094ccb56
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   - libzlib >=1.3.1,<2.0a0
-  - pcre2 >=10.46,<10.47.0a0
+  - pcre2 >=10.47,<10.48.0a0
   - ucrt >=10.0.20348.0
   - vc >=14.3,<15
   - vc14_runtime >=14.44.35208
   constrains:
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+  - glib 2.86.3 *_0
   license: LGPL-2.1-or-later
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+  md5: ab8189163748f95d4cb18ea1952943c3
   depends:
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   constrains:
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   license: GPL-3.0-only WITH GCC-exception-3.1
+  license_family: GPL
   purls: []
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-- conda: https://conda.anaconda.org/conda-forge/win-64/libhwloc-2.12.1-default_h64bd3f2_1002.conda
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-  - liblapacke 3.11.0   2*_openblas
-  - libcblas   3.11.0   2*_openblas
+  - blas 2.305   openblas
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-  - libcblas   3.11.0   4*_openblas
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+  - libcblas   3.11.0   5*_openblas
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-  - blas 2.304   openblas
-  - liblapacke 3.11.0   4*_openblas
+  - libcblas   3.11.0   5*_openblas
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+  - libblas 3.11.0 5_hf2e6a31_mkl
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-  - libcblas   3.11.0   4*_mkl
-  - blas 2.304   mkl
+  - libcblas   3.11.0   5*_mkl
+  - blas 2.305   mkl
+  - liblapacke 3.11.0   5*_mkl
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+  - python 3.14.* *_cp314
   license: BSD-3-Clause
   license_family: BSD
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-  size: 7002
-  timestamp: 1752805902938
+  size: 6989
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 - conda: https://conda.anaconda.org/conda-forge/noarch/pytz-2025.2-pyhd8ed1ab_0.conda
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-- conda: https://conda.anaconda.org/conda-forge/win-64/pywin32-311-py313h40c08fc_1.conda
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   - ucrt >=10.0.20348.0
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+  - python_abi 3.14.* *_cp314
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/pyyaml-6.0.3-py313h3dea7bd_0.conda
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+  size: 216325
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+- conda: https://conda.anaconda.org/conda-forge/noarch/pyyaml-6.0.3-pyh7db6752_0.conda
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+  md5: b12f41c0d7fb5ab81709fcc86579688f
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+  - pyyaml_no_compile
   license: MIT
   license_family: MIT
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-- conda: https://conda.anaconda.org/conda-forge/win-64/pyyaml-6.0.3-py313hd650c13_0.conda
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   - dbus >=1.16.2,<2.0a0
-  - double-conversion >=3.3.1,<3.4.0a0
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   - fontconfig >=2.15.0,<3.0a0
   - fonts-conda-ecosystem
-  - harfbuzz >=12.1.0
-  - icu >=75.1,<76.0a0
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   - krb5 >=1.21.3,<1.22.0a0
-  - libclang-cpp21.1 >=21.1.4,<21.2.0a0
-  - libclang13 >=21.1.4
+  - libclang-cpp21.1 >=21.1.7,<21.2.0a0
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-  - libpq >=18.0,<19.0a0
-  - libsqlite >=3.50.4,<4.0a0
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+  - libpq >=18.1,<19.0a0
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   - libstdcxx >=14
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   - libvulkan-loader >=1.4.328.1,<2.0a0
   - libwebp-base >=1.6.0,<2.0a0
   - libxcb >=1.17.0,<2.0a0
-  - libxkbcommon >=1.12.2,<2.0a0
+  - libxkbcommon >=1.13.1,<2.0a0
   - libxml2
   - libxml2-16 >=2.14.6
   - libzlib >=1.3.1,<2.0a0
   - openssl >=3.5.4,<4.0a0
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   - wayland >=1.24.0,<2.0a0
   - xcb-util >=0.4.1,<0.5.0a0
-  - xcb-util-cursor >=0.1.5,<0.2.0a0
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+  - qt 6.10.1
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   - libcxx >=19
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+  - qt 6.10.1
   license: LGPL-3.0-only
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-  size: 95659243
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   - zstd >=1.5.7,<1.5.8.0a0
-  - libgcc >=14
   - __glibc >=2.17,<3.0.a0
-  - python_abi 3.13.* *_cp313
+  - libgcc >=14
   - zstd >=1.5.7,<1.6.0a0
+  - python_abi 3.14.* *_cp314
   license: BSD-3-Clause
   license_family: BSD
   purls:
   - pkg:pypi/zstandard?source=hash-mapping
-  size: 471496
-  timestamp: 1762512679097
-- conda: https://conda.anaconda.org/conda-forge/osx-64/zstandard-0.25.0-py312h01f6755_1.conda
-  sha256: 5360439241921c612a5df77e28ce0ae4912eef7de65dc42adba5499878a67e87
-  md5: d9209ec6445f95fba0c3c64fa4a46216
+  size: 473605
+  timestamp: 1762512687493
+- conda: https://conda.anaconda.org/conda-forge/osx-64/zstandard-0.25.0-py314hd1e8ddb_1.conda
+  sha256: cf12b4c138eef5160b12990278ac77dec5ca91de60638dd6cf1e60e4331d8087
+  md5: b94712955dc017da312e6f6b4c6d4866
   depends:
   - python
   - cffi >=1.11
   - zstd >=1.5.7,<1.5.8.0a0
   - __osx >=10.13
-  - python_abi 3.12.* *_cp312
+  - python_abi 3.14.* *_cp314
   - zstd >=1.5.7,<1.6.0a0
   license: BSD-3-Clause
   license_family: BSD
   purls:
   - pkg:pypi/zstandard?source=hash-mapping
-  size: 462661
-  timestamp: 1762512711429
+  size: 470136
+  timestamp: 1762512696464
 - conda: https://conda.anaconda.org/conda-forge/osx-arm64/zstandard-0.25.0-py312h37e1c23_1.conda
   sha256: af843b0fe62d128a70f91dc954b2cb692f349a237b461788bd25dd928d0d1ef8
   md5: 9300889791d4decceea3728ad3b423ec
@@ -11205,9 +11498,9 @@ packages:
   - pkg:pypi/zstandard?source=hash-mapping
   size: 390920
   timestamp: 1762512713481
-- conda: https://conda.anaconda.org/conda-forge/win-64/zstandard-0.25.0-py313h5fd188c_1.conda
-  sha256: 5f751687a64cf5a6d69ad79aa437f45d6cc388d9e887dcdecff9d3b08cf7fd87
-  md5: 46f6f9bb324a58a9b081bbc56ade37f2
+- conda: https://conda.anaconda.org/conda-forge/win-64/zstandard-0.25.0-py314hc5dbbe4_1.conda
+  sha256: 87bf6ba2dcc59dfbb8d977b9c29d19b6845ad54e092ea8204dcec62d7b461a30
+  md5: c1ef46c3666be935fbb7460c24950cff
   depends:
   - python
   - cffi >=1.11
@@ -11218,25 +11511,25 @@ packages:
   - vc >=14.3,<15
   - vc14_runtime >=14.44.35208
   - ucrt >=10.0.20348.0
-  - python_abi 3.13.* *_cp313
   - zstd >=1.5.7,<1.6.0a0
+  - python_abi 3.14.* *_cp314
   license: BSD-3-Clause
   license_family: BSD
   purls:
   - pkg:pypi/zstandard?source=hash-mapping
-  size: 380854
-  timestamp: 1762512720226
-- conda: https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-h3691f8a_4.conda
-  sha256: 58e0344d81520c8734533fff64a28a5be7edf84618341fc70d3e20bd0a1fdc3e
-  md5: af7715829219de9043fcc5575e66d22e
+  size: 381179
+  timestamp: 1762512709971
+- conda: https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb78ec9c_6.conda
+  sha256: 68f0206ca6e98fea941e5717cec780ed2873ffabc0e1ed34428c061e2c6268c7
+  md5: 4a13eeac0b5c8e5b8ab496e6c4ddd829
   depends:
   - __glibc >=2.17,<3.0.a0
   - libzlib >=1.3.1,<2.0a0
   license: BSD-3-Clause
   license_family: BSD
   purls: []
-  size: 559888
-  timestamp: 1764431250718
+  size: 601375
+  timestamp: 1764777111296
 - conda: https://conda.anaconda.org/conda-forge/osx-64/zstd-1.5.7-h3eecb57_6.conda
   sha256: 47101a4055a70a4876ffc87b750ab2287b67eca793f21c8224be5e1ee6394d3f
   md5: 727109b184d680772e3122f40136d5ca
@@ -11244,6 +11537,7 @@ packages:
   - __osx >=10.13
   - libzlib >=1.3.1,<2.0a0
   license: BSD-3-Clause
+  license_family: BSD
   purls: []
   size: 528148
   timestamp: 1764777156963
@@ -11254,6 +11548,7 @@ packages:
   - __osx >=11.0
   - libzlib >=1.3.1,<2.0a0
   license: BSD-3-Clause
+  license_family: BSD
   purls: []
   size: 433413
   timestamp: 1764777166076
@@ -11266,6 +11561,7 @@ packages:
   - ucrt >=10.0.20348.0
   - libzlib >=1.3.1,<2.0a0
   license: BSD-3-Clause
+  license_family: BSD
   purls: []
   size: 388453
   timestamp: 1764777142545
diff --git a/prototype/EventBroker/event_broker.py b/prototype/EventBroker/event_broker.py
deleted file mode 100644
index c9c137a21..000000000
--- a/prototype/EventBroker/event_broker.py
+++ /dev/null
@@ -1,24 +0,0 @@
-from collections import defaultdict
-from typing import Any, Literal
-
-
-class EventBroker:
-    _instance = None
-
-    def __new__(cls, *args, **kwargs):
-        if cls._instance is None:
-            cls._instance = super().__new__(cls)
-        return cls._instance
-
-    def __init__(self):
-        if not hasattr(self, "registry"):
-            self.registry = defaultdict(list)
-
-    def register(self, event_type: Any, callable: Literal["event_type"]):
-        self.registry[event_type].append(callable)
-
-    def publish(self, event: Any):
-        event_type = type(event)
-        if callable_list := self.registry.get(event_type):
-            for callable in callable_list:
-                callable(event)
diff --git a/prototype/EventBroker/event_type.py b/prototype/EventBroker/event_type.py
deleted file mode 100644
index 2ad4fc877..000000000
--- a/prototype/EventBroker/event_type.py
+++ /dev/null
@@ -1,25 +0,0 @@
-from attr import dataclass
-
-
-class Event:
-    pass
-
-
-@dataclass
-class scan_uuid(Event):
-    scan_uuid_list: list[str]
-
-
-@dataclass
-class selected_uuid(Event):
-    selected_uuid: str
-
-
-@dataclass
-class meta_data(Event):
-    meta_data_dict: dict
-
-
-@dataclass
-class template_data(Event):
-    template_data: str
diff --git a/prototype/library/FileSystem/Facilities/load_ansto.py b/prototype/library/FileSystem/Facilities/load_ansto.py
deleted file mode 100644
index f4e867e31..000000000
--- a/prototype/library/FileSystem/Facilities/load_ansto.py
+++ /dev/null
@@ -1,122 +0,0 @@
-"""Load ANSTO data."""
-
-import logging
-import os
-from typing import Iterable, Optional
-
-logger = logging.getLogger("TAVI")
-
-
-class LoadANSTO:
-    """
-    Loader for NIST triple-axis spectrometer data.
-
-    This class provides utilities to read SPICE-formatted data files produced
-    at NIST. It supports loading
-    either an explicit list of data files or all files within a specified
-    directory. Metadata, numeric arrays, and UB matrix configurations are
-    parsed into structured dataclasses (`RawData`, `RawMetaData`, `UbConf`)
-    and organized into a `TaviProject`.
-
-    Args:
-        data_folder (str | PathLike):
-            Directory containing SPICE data files. Used if `data_files` is not provided.
-        data_files (Iterable[str] | None):
-            Optional explicit list of filenames to load. If `None`, all files
-            in `data_folder` are processed.
-        ub_dir (str | PathLike | None):
-            Optional path to a UBConf directory. If not provided, the loader
-            searches for a `UBConf` folder adjacent to `data_folder`.
-
-    Methods:
-        score() -> float:
-            Return a heuristic score for how likely the directory corresponds
-            to ORNL data. Currently returns a placeholder value (100).
-        load() -> TaviProject:
-            Public entry point to load data files into a `TaviProject`.
-        _load_files() -> TaviProject:
-            Internal method implementing the actual parsing and data
-            organization logic.
-
-    """
-
-    def __init__(
-        self,
-        data_folder: Optional[os.PathLike | str],
-        data_files: Optional[Iterable[str]] = None,
-        ub_dir: Optional[os.PathLike | str] = None,
-    ) -> None:
-        """Init."""
-        self.data_folder = data_folder
-        self.data_files = data_files
-        self.ub_dir = ub_dir
-
-    def score(self) -> float:
-        """Score."""
-        return 0
-
-    def load(self) -> None:
-        """
-        Load SPICE data files into a TaviProject.
-
-        This method serves as the main entry point for reading triple-axis
-        spectrometer (SPICE) data. It gathers data files from either:
-
-        - `self.data_files` if a list of files is explicitly provided, or
-        - all files in `self.data_folder` if no list is given.
-
-        Each file is parsed into numeric arrays and metadata, dynamically mapped
-        onto `RawData`, `RawMetaData`, and (if applicable) `UbConf` dataclasses.
-        These are assembled into `Scan` objects, which are collected into a
-        `TaviProject`.
-
-        Returns:
-            TaviProject: A project object containing all loaded scans, indexed by filename.
-
-        """
-        return self._load_files()
-
-    def _load_files(self) -> None:
-        """
-        Load SPICE data files into a TaviProject.
-
-        This function reads each SPICE data file from either the provided list
-        of `data_files` or from the `data_folder` directory. For each file, it:
-
-        1. Uses `spice_reader.read_spice_datafile()` to extract:
-           - numeric data arrays
-           - column names
-           - metadata
-           - additional information
-           - error messages
-
-        2. Dynamically generates `RawData` and `RawMetaData` dataclasses with
-           attributes inferred from the file contents. Attribute names are
-           sanitized (e.g., replacing `-`, `.`, or whitespace with `_`) and
-           guarded against invalid Python identifiers.
-
-        3. Handles one-dimensional numeric data gracefully by converting scalars
-           to 1D numpy arrays.
-
-        4. Processes metadata entries. If a "ubconf" key is present, the
-           corresponding UB matrix configuration file is searched for in the
-           `ub_dir`, or in a `UBConf` subfolder adjacent to the data folder.
-           If found, the UB configuration is read using
-           `spice_reader.read_spice_ubconf()` and stored in a dynamically
-           generated `UbConf` dataclass.
-
-        5. Constructs a `Scan` object containing:
-           - the populated `RawData` instance
-           - the populated `RawMetaData` instance
-           - the UB configuration (if available)
-           - column names
-           - error messages
-           - other auxiliary information
-
-        6. Stores the `Scan` object in a `TaviProject`, keyed by the filename.
-
-        Returns:
-            TaviProject: A project object containing all scans indexed by filename.
-
-        """
-        pass
diff --git a/prototype/library/FileSystem/Facilities/load_frmii.py b/prototype/library/FileSystem/Facilities/load_frmii.py
deleted file mode 100644
index 1f75d76ba..000000000
--- a/prototype/library/FileSystem/Facilities/load_frmii.py
+++ /dev/null
@@ -1,122 +0,0 @@
-"""Load FRMII data."""
-
-import logging
-import os
-from typing import Iterable, Optional
-
-logger = logging.getLogger("TAVI")
-
-
-class LoadFRMII:
-    """
-    Loader for NIST triple-axis spectrometer data.
-
-    This class provides utilities to read SPICE-formatted data files produced
-    at NIST. It supports loading
-    either an explicit list of data files or all files within a specified
-    directory. Metadata, numeric arrays, and UB matrix configurations are
-    parsed into structured dataclasses (`RawData`, `RawMetaData`, `UbConf`)
-    and organized into a `TaviProject`.
-
-    Args:
-        data_folder (str | PathLike):
-            Directory containing SPICE data files. Used if `data_files` is not provided.
-        data_files (Iterable[str] | None):
-            Optional explicit list of filenames to load. If `None`, all files
-            in `data_folder` are processed.
-        ub_dir (str | PathLike | None):
-            Optional path to a UBConf directory. If not provided, the loader
-            searches for a `UBConf` folder adjacent to `data_folder`.
-
-    Methods:
-        score() -> float:
-            Return a heuristic score for how likely the directory corresponds
-            to ORNL data. Currently returns a placeholder value (100).
-        load() -> TaviProject:
-            Public entry point to load data files into a `TaviProject`.
-        _load_files() -> TaviProject:
-            Internal method implementing the actual parsing and data
-            organization logic.
-
-    """
-
-    def __init__(
-        self,
-        data_folder: Optional[os.PathLike | str],
-        data_files: Optional[Iterable[str]] = None,
-        ub_dir: Optional[os.PathLike | str] = None,
-    ) -> None:
-        """Init."""
-        self.data_folder = data_folder
-        self.data_files = data_files
-        self.ub_dir = ub_dir
-
-    def score(self) -> float:
-        """Score."""
-        return 0
-
-    def load(self) -> None:
-        """
-        Load SPICE data files into a TaviProject.
-
-        This method serves as the main entry point for reading triple-axis
-        spectrometer (SPICE) data. It gathers data files from either:
-
-        - `self.data_files` if a list of files is explicitly provided, or
-        - all files in `self.data_folder` if no list is given.
-
-        Each file is parsed into numeric arrays and metadata, dynamically mapped
-        onto `RawData`, `RawMetaData`, and (if applicable) `UbConf` dataclasses.
-        These are assembled into `Scan` objects, which are collected into a
-        `TaviProject`.
-
-        Returns:
-            TaviProject: A project object containing all loaded scans, indexed by filename.
-
-        """
-        return self._load_files()
-
-    def _load_files(self) -> None:
-        """
-        Load SPICE data files into a TaviProject.
-
-        This function reads each SPICE data file from either the provided list
-        of `data_files` or from the `data_folder` directory. For each file, it:
-
-        1. Uses `spice_reader.read_spice_datafile()` to extract:
-           - numeric data arrays
-           - column names
-           - metadata
-           - additional information
-           - error messages
-
-        2. Dynamically generates `RawData` and `RawMetaData` dataclasses with
-           attributes inferred from the file contents. Attribute names are
-           sanitized (e.g., replacing `-`, `.`, or whitespace with `_`) and
-           guarded against invalid Python identifiers.
-
-        3. Handles one-dimensional numeric data gracefully by converting scalars
-           to 1D numpy arrays.
-
-        4. Processes metadata entries. If a "ubconf" key is present, the
-           corresponding UB matrix configuration file is searched for in the
-           `ub_dir`, or in a `UBConf` subfolder adjacent to the data folder.
-           If found, the UB configuration is read using
-           `spice_reader.read_spice_ubconf()` and stored in a dynamically
-           generated `UbConf` dataclass.
-
-        5. Constructs a `Scan` object containing:
-           - the populated `RawData` instance
-           - the populated `RawMetaData` instance
-           - the UB configuration (if available)
-           - column names
-           - error messages
-           - other auxiliary information
-
-        6. Stores the `Scan` object in a `TaviProject`, keyed by the filename.
-
-        Returns:
-            TaviProject: A project object containing all scans indexed by filename.
-
-        """
-        pass
diff --git a/prototype/library/FileSystem/Facilities/load_hzb.py b/prototype/library/FileSystem/Facilities/load_hzb.py
deleted file mode 100644
index 2ad7f52f5..000000000
--- a/prototype/library/FileSystem/Facilities/load_hzb.py
+++ /dev/null
@@ -1,122 +0,0 @@
-"""Load HZB data."""
-
-import logging
-import os
-from typing import Iterable, Optional
-
-logger = logging.getLogger("TAVI")
-
-
-class LoadHZB:
-    """
-    Loader for NIST triple-axis spectrometer data.
-
-    This class provides utilities to read SPICE-formatted data files produced
-    at NIST. It supports loading
-    either an explicit list of data files or all files within a specified
-    directory. Metadata, numeric arrays, and UB matrix configurations are
-    parsed into structured dataclasses (`RawData`, `RawMetaData`, `UbConf`)
-    and organized into a `TaviProject`.
-
-    Args:
-        data_folder (str | PathLike):
-            Directory containing SPICE data files. Used if `data_files` is not provided.
-        data_files (Iterable[str] | None):
-            Optional explicit list of filenames to load. If `None`, all files
-            in `data_folder` are processed.
-        ub_dir (str | PathLike | None):
-            Optional path to a UBConf directory. If not provided, the loader
-            searches for a `UBConf` folder adjacent to `data_folder`.
-
-    Methods:
-        score() -> float:
-            Return a heuristic score for how likely the directory corresponds
-            to ORNL data. Currently returns a placeholder value (100).
-        load() -> TaviProject:
-            Public entry point to load data files into a `TaviProject`.
-        _load_files() -> TaviProject:
-            Internal method implementing the actual parsing and data
-            organization logic.
-
-    """
-
-    def __init__(
-        self,
-        data_folder: Optional[os.PathLike | str],
-        data_files: Optional[Iterable[str]] = None,
-        ub_dir: Optional[os.PathLike | str] = None,
-    ) -> None:
-        """Init."""
-        self.data_folder = data_folder
-        self.data_files = data_files
-        self.ub_dir = ub_dir
-
-    def score(self) -> float:
-        """Score."""
-        return 0
-
-    def load(self) -> None:
-        """
-        Load SPICE data files into a TaviProject.
-
-        This method serves as the main entry point for reading triple-axis
-        spectrometer (SPICE) data. It gathers data files from either:
-
-        - `self.data_files` if a list of files is explicitly provided, or
-        - all files in `self.data_folder` if no list is given.
-
-        Each file is parsed into numeric arrays and metadata, dynamically mapped
-        onto `RawData`, `RawMetaData`, and (if applicable) `UbConf` dataclasses.
-        These are assembled into `Scan` objects, which are collected into a
-        `TaviProject`.
-
-        Returns:
-            TaviProject: A project object containing all loaded scans, indexed by filename.
-
-        """
-        return self._load_files()
-
-    def _load_files(self) -> None:
-        """
-        Load SPICE data files into a TaviProject.
-
-        This function reads each SPICE data file from either the provided list
-        of `data_files` or from the `data_folder` directory. For each file, it:
-
-        1. Uses `spice_reader.read_spice_datafile()` to extract:
-           - numeric data arrays
-           - column names
-           - metadata
-           - additional information
-           - error messages
-
-        2. Dynamically generates `RawData` and `RawMetaData` dataclasses with
-           attributes inferred from the file contents. Attribute names are
-           sanitized (e.g., replacing `-`, `.`, or whitespace with `_`) and
-           guarded against invalid Python identifiers.
-
-        3. Handles one-dimensional numeric data gracefully by converting scalars
-           to 1D numpy arrays.
-
-        4. Processes metadata entries. If a "ubconf" key is present, the
-           corresponding UB matrix configuration file is searched for in the
-           `ub_dir`, or in a `UBConf` subfolder adjacent to the data folder.
-           If found, the UB configuration is read using
-           `spice_reader.read_spice_ubconf()` and stored in a dynamically
-           generated `UbConf` dataclass.
-
-        5. Constructs a `Scan` object containing:
-           - the populated `RawData` instance
-           - the populated `RawMetaData` instance
-           - the UB configuration (if available)
-           - column names
-           - error messages
-           - other auxiliary information
-
-        6. Stores the `Scan` object in a `TaviProject`, keyed by the filename.
-
-        Returns:
-            TaviProject: A project object containing all scans indexed by filename.
-
-        """
-        pass
diff --git a/prototype/library/FileSystem/Facilities/load_ill.py b/prototype/library/FileSystem/Facilities/load_ill.py
deleted file mode 100644
index aba37d9da..000000000
--- a/prototype/library/FileSystem/Facilities/load_ill.py
+++ /dev/null
@@ -1,122 +0,0 @@
-"""Load ILL data."""
-
-import logging
-import os
-from typing import Iterable, Optional
-
-logger = logging.getLogger("TAVI")
-
-
-class LoadILL:
-    """
-    Loader for NIST triple-axis spectrometer data.
-
-    This class provides utilities to read SPICE-formatted data files produced
-    at NIST. It supports loading
-    either an explicit list of data files or all files within a specified
-    directory. Metadata, numeric arrays, and UB matrix configurations are
-    parsed into structured dataclasses (`RawData`, `RawMetaData`, `UbConf`)
-    and organized into a `TaviProject`.
-
-    Args:
-        data_folder (str | PathLike):
-            Directory containing SPICE data files. Used if `data_files` is not provided.
-        data_files (Iterable[str] | None):
-            Optional explicit list of filenames to load. If `None`, all files
-            in `data_folder` are processed.
-        ub_dir (str | PathLike | None):
-            Optional path to a UBConf directory. If not provided, the loader
-            searches for a `UBConf` folder adjacent to `data_folder`.
-
-    Methods:
-        score() -> float:
-            Return a heuristic score for how likely the directory corresponds
-            to ORNL data. Currently returns a placeholder value (100).
-        load() -> TaviProject:
-            Public entry point to load data files into a `TaviProject`.
-        _load_files() -> TaviProject:
-            Internal method implementing the actual parsing and data
-            organization logic.
-
-    """
-
-    def __init__(
-        self,
-        data_folder: Optional[os.PathLike | str],
-        data_files: Optional[Iterable[str]] = None,
-        ub_dir: Optional[os.PathLike | str] = None,
-    ) -> None:
-        """Init."""
-        self.data_folder = data_folder
-        self.data_files = data_files
-        self.ub_dir = ub_dir
-
-    def score(self) -> float:
-        """Score."""
-        return 0
-
-    def load(self) -> None:
-        """
-        Load SPICE data files into a TaviProject.
-
-        This method serves as the main entry point for reading triple-axis
-        spectrometer (SPICE) data. It gathers data files from either:
-
-        - `self.data_files` if a list of files is explicitly provided, or
-        - all files in `self.data_folder` if no list is given.
-
-        Each file is parsed into numeric arrays and metadata, dynamically mapped
-        onto `RawData`, `RawMetaData`, and (if applicable) `UbConf` dataclasses.
-        These are assembled into `Scan` objects, which are collected into a
-        `TaviProject`.
-
-        Returns:
-            TaviProject: A project object containing all loaded scans, indexed by filename.
-
-        """
-        return self._load_files()
-
-    def _load_files(self) -> None:
-        """
-        Load SPICE data files into a TaviProject.
-
-        This function reads each SPICE data file from either the provided list
-        of `data_files` or from the `data_folder` directory. For each file, it:
-
-        1. Uses `spice_reader.read_spice_datafile()` to extract:
-           - numeric data arrays
-           - column names
-           - metadata
-           - additional information
-           - error messages
-
-        2. Dynamically generates `RawData` and `RawMetaData` dataclasses with
-           attributes inferred from the file contents. Attribute names are
-           sanitized (e.g., replacing `-`, `.`, or whitespace with `_`) and
-           guarded against invalid Python identifiers.
-
-        3. Handles one-dimensional numeric data gracefully by converting scalars
-           to 1D numpy arrays.
-
-        4. Processes metadata entries. If a "ubconf" key is present, the
-           corresponding UB matrix configuration file is searched for in the
-           `ub_dir`, or in a `UBConf` subfolder adjacent to the data folder.
-           If found, the UB configuration is read using
-           `spice_reader.read_spice_ubconf()` and stored in a dynamically
-           generated `UbConf` dataclass.
-
-        5. Constructs a `Scan` object containing:
-           - the populated `RawData` instance
-           - the populated `RawMetaData` instance
-           - the UB configuration (if available)
-           - column names
-           - error messages
-           - other auxiliary information
-
-        6. Stores the `Scan` object in a `TaviProject`, keyed by the filename.
-
-        Returns:
-            TaviProject: A project object containing all scans indexed by filename.
-
-        """
-        pass
diff --git a/prototype/library/FileSystem/Facilities/load_nist.py b/prototype/library/FileSystem/Facilities/load_nist.py
deleted file mode 100644
index 12561bb79..000000000
--- a/prototype/library/FileSystem/Facilities/load_nist.py
+++ /dev/null
@@ -1,122 +0,0 @@
-"""Load nist data."""
-
-import logging
-import os
-from typing import Iterable, Optional
-
-logger = logging.getLogger("TAVI")
-
-
-class LoadNIST:
-    """
-    Loader for NIST triple-axis spectrometer data.
-
-    This class provides utilities to read SPICE-formatted data files produced
-    at NIST. It supports loading
-    either an explicit list of data files or all files within a specified
-    directory. Metadata, numeric arrays, and UB matrix configurations are
-    parsed into structured dataclasses (`RawData`, `RawMetaData`, `UbConf`)
-    and organized into a `TaviProject`.
-
-    Args:
-        data_folder (str | PathLike):
-            Directory containing SPICE data files. Used if `data_files` is not provided.
-        data_files (Iterable[str] | None):
-            Optional explicit list of filenames to load. If `None`, all files
-            in `data_folder` are processed.
-        ub_dir (str | PathLike | None):
-            Optional path to a UBConf directory. If not provided, the loader
-            searches for a `UBConf` folder adjacent to `data_folder`.
-
-    Methods:
-        score() -> float:
-            Return a heuristic score for how likely the directory corresponds
-            to ORNL data. Currently returns a placeholder value (100).
-        load() -> TaviProject:
-            Public entry point to load data files into a `TaviProject`.
-        _load_files() -> TaviProject:
-            Internal method implementing the actual parsing and data
-            organization logic.
-
-    """
-
-    def __init__(
-        self,
-        data_folder: Optional[os.PathLike | str],
-        data_files: Optional[Iterable[str]] = None,
-        ub_dir: Optional[os.PathLike | str] = None,
-    ) -> None:
-        """Init."""
-        self.data_folder = data_folder
-        self.data_files = data_files
-        self.ub_dir = ub_dir
-
-    def score(self) -> float:
-        """Score."""
-        return 0
-
-    def load(self) -> None:
-        """
-        Load SPICE data files into a TaviProject.
-
-        This method serves as the main entry point for reading triple-axis
-        spectrometer (SPICE) data. It gathers data files from either:
-
-        - `self.data_files` if a list of files is explicitly provided, or
-        - all files in `self.data_folder` if no list is given.
-
-        Each file is parsed into numeric arrays and metadata, dynamically mapped
-        onto `RawData`, `RawMetaData`, and (if applicable) `UbConf` dataclasses.
-        These are assembled into `Scan` objects, which are collected into a
-        `TaviProject`.
-
-        Returns:
-            TaviProject: A project object containing all loaded scans, indexed by filename.
-
-        """
-        return self._load_files()
-
-    def _load_files(self) -> None:
-        """
-        Load SPICE data files into a TaviProject.
-
-        This function reads each SPICE data file from either the provided list
-        of `data_files` or from the `data_folder` directory. For each file, it:
-
-        1. Uses `spice_reader.read_spice_datafile()` to extract:
-           - numeric data arrays
-           - column names
-           - metadata
-           - additional information
-           - error messages
-
-        2. Dynamically generates `RawData` and `RawMetaData` dataclasses with
-           attributes inferred from the file contents. Attribute names are
-           sanitized (e.g., replacing `-`, `.`, or whitespace with `_`) and
-           guarded against invalid Python identifiers.
-
-        3. Handles one-dimensional numeric data gracefully by converting scalars
-           to 1D numpy arrays.
-
-        4. Processes metadata entries. If a "ubconf" key is present, the
-           corresponding UB matrix configuration file is searched for in the
-           `ub_dir`, or in a `UBConf` subfolder adjacent to the data folder.
-           If found, the UB configuration is read using
-           `spice_reader.read_spice_ubconf()` and stored in a dynamically
-           generated `UbConf` dataclass.
-
-        5. Constructs a `Scan` object containing:
-           - the populated `RawData` instance
-           - the populated `RawMetaData` instance
-           - the UB configuration (if available)
-           - column names
-           - error messages
-           - other auxiliary information
-
-        6. Stores the `Scan` object in a `TaviProject`, keyed by the filename.
-
-        Returns:
-            TaviProject: A project object containing all scans indexed by filename.
-
-        """
-        pass
diff --git a/prototype/library/FileSystem/Facilities/load_ornl.py b/prototype/library/FileSystem/Facilities/load_ornl.py
deleted file mode 100644
index 225830186..000000000
--- a/prototype/library/FileSystem/Facilities/load_ornl.py
+++ /dev/null
@@ -1,228 +0,0 @@
-"""Load ORNL data."""
-
-import logging
-import os
-from dataclasses import field, make_dataclass
-from typing import Any, Iterable, Optional
-
-import numpy as np
-
-import tavi.library.FileSystem.spice_reader as spice_reader
-from tavi.library.FileSystem.tavi_class_factory import Scan
-
-logger = logging.getLogger("TAVI")
-
-
-class LoadORNL:
-    """
-    Loader for ORNL SPICE triple-axis spectrometer data.
-
-    This class provides utilities to read SPICE-formatted data files produced
-    at ORNL instruments (e.g., CG4C, HB1, HB3, HB1A). It supports loading
-    either an explicit list of data files or all files within a specified
-    directory. Metadata, numeric arrays, and UB matrix configurations are
-    parsed into structured dataclasses (`RawData`, `RawMetaData`, `UbConf`)
-    and organized into a `TaviProject`.
-
-    Args:
-        data_folder (str | PathLike):
-            Directory containing SPICE data files. Used if `data_files` is not provided.
-        data_files (Iterable[str] | None):
-            Optional explicit list of filenames to load. If `None`, all files
-            in `data_folder` are processed.
-        ub_dir (str | PathLike | None):
-            Optional path to a UBConf directory. If not provided, the loader
-            searches for a `UBConf` folder adjacent to `data_folder`.
-
-    Methods:
-        score() -> float:
-            Return a heuristic score for how likely the directory corresponds
-            to ORNL data. Currently returns a placeholder value (100).
-        load() -> TaviProject:
-            Public entry point to load data files into a `TaviProject`.
-        _load_files() -> TaviProject:
-            Internal method implementing the actual parsing and data
-            organization logic.
-
-    """
-
-    def __init__(
-        self,
-        data_folder: Optional[os.PathLike | str] = None,
-        data_files: Optional[Iterable[str]] = None,
-        ub_dir: Optional[os.PathLike | str] = None,
-    ) -> None:
-        """Init."""
-        self.data_folder = data_folder
-        self.data_files = data_files
-        self.ub_dir = ub_dir
-
-    def score(self) -> float:
-        """Score."""
-        return 100
-
-    def load(self) -> dict:
-        """
-        Load SPICE data files into a TaviProject.
-
-        This method serves as the main entry point for reading triple-axis
-        spectrometer (SPICE) data. It gathers data files from either:
-
-        - `self.data_files` if a list of files is explicitly provided, or
-        - all files in `self.data_folder` if no list is given.
-
-        Each file is parsed into numeric arrays and metadata, dynamically mapped
-        onto `RawData`, `RawMetaData`, and (if applicable) `UbConf` dataclasses.
-        These are assembled into `Scan` objects, which are collected into a
-        `TaviProject`.
-
-        Returns:
-            TaviProject: A project object containing all loaded scans, indexed by filename.
-
-        """
-        return self._load_files()
-
-    def _load_files(self) -> dict:
-        """
-        Load SPICE data files into a TaviProject.
-
-        This function reads each SPICE data file from either the provided list
-        of `data_files` or from the `data_folder` directory. For each file, it:
-
-        1. Uses `spice_reader.read_spice_datafile()` to extract:
-           - numeric data arrays
-           - column names
-           - metadata
-           - additional information
-           - error messages
-
-        2. Dynamically generates `RawData` and `RawMetaData` dataclasses with
-           attributes inferred from the file contents. Attribute names are
-           sanitized (e.g., replacing `-`, `.`, or whitespace with `_`) and
-           guarded against invalid Python identifiers.
-
-        3. Handles one-dimensional numeric data gracefully by converting scalars
-           to 1D numpy arrays.
-
-        4. Processes metadata entries. If a "ubconf" key is present, the
-           corresponding UB matrix configuration file is searched for in the
-           `ub_dir`, or in a `UBConf` subfolder adjacent to the data folder.
-           If found, the UB configuration is read using
-           `spice_reader.read_spice_ubconf()` and stored in a dynamically
-           generated `UbConf` dataclass.
-
-        5. Constructs a `Scan` object containing:
-           - the populated `RawData` instance
-           - the populated `RawMetaData` instance
-           - the UB configuration (if available)
-           - column names
-           - error messages
-           - other auxiliary information
-
-        6. Stores the `Scan` object in a `TaviProject`, keyed by the filename.
-
-        Returns:
-            TaviProject: A project object containing all scans indexed by filename.
-
-        """
-        scan_list = {}
-        list_of_files = self.data_files if self.data_files else os.listdir(self.data_folder)
-        for filename in list_of_files:
-            rawdata = make_dataclass("RawData", [], slots=True)
-            rawmetadata = make_dataclass("RawMetaData", [], slots=True)
-            ub_conf = make_dataclass("UbConf", [], slots=True)
-
-            numeric_data, col_names, meta_data, others, error_message = spice_reader.read_spice_datafile(
-                os.path.join(self.data_folder, filename)
-            )
-
-            # ------------------load data------------------
-            for col_name in col_names:
-                # guard against invalid format
-                if col_name[0].isdigit():
-                    col_name = "_" + col_name
-                attr_name = col_name.replace("-", "_").replace(" ", "_").replace(".", "")
-                try:
-                    # adding a checker to avoid re-creating class attributes, make the code faster
-                    if hasattr(rawdata, attr_name):
-                        setattr(rawdata, attr_name, numeric_data[:, col_names.index(col_name)])
-                    else:
-                        rawdata = make_dataclass(
-                            "RawData", fields=[(attr_name, np.ndarray, field(default=None))], bases=(rawdata,)
-                        )
-                        setattr(rawdata, attr_name, numeric_data[:, col_names.index(col_name)])
-
-                # if the numeric_data only has 1 entry, we'd still like to parse it as a 1D numpy array
-                except IndexError:
-                    rawdata = make_dataclass(
-                        "RawData", fields=[(attr_name, np.ndarray, field(default=None))], bases=(rawdata,)
-                    )
-                    setattr(rawdata, attr_name, np.array([numeric_data[col_names.index(col_name)]]))
-
-            rawdata = make_dataclass("RawData", fields=[("column_names", list, field(default=None))], bases=(rawdata,))
-            setattr(rawdata, "column_names", col_names)
-
-            # ------------------load meta data and ubconf------------------
-            for key, value in meta_data.items():
-                # replace "-" or " " with "_" to consolidate with python attribute's format
-                if key[0].isdigit():
-                    key = "_" + key
-                key = key.replace("-", "_").replace(" ", "_").replace(".", "")
-                # adding a checker to avoid re-creating class attributes, make the code faster
-                if hasattr(rawmetadata, key):
-                    setattr(rawmetadata, key, value)
-                else:
-                    rawmetadata = make_dataclass(
-                        "RawMetaData", fields=[(key, str, field(default=None))], bases=(rawmetadata,)
-                    )
-                    setattr(rawmetadata, key, value)
-
-                match key:
-                    case "ubconf":
-                        ub_filename = value
-                        if ub_filename:
-                            # users don't need to set specific ub_directory, the loader will try to search for ub
-                            if not self.ub_dir:
-                                prev_dir = os.path.join(self.data_folder, os.pardir)
-                                if "UBConf" in os.listdir(prev_dir):
-                                    self.ub_dir = os.path.join(prev_dir, "UBConf")
-                            # look into "UBConf" folder first
-                            if ub_filename in os.listdir(self.ub_dir):
-                                ub_data = spice_reader.read_spice_ubconf(os.path.join(self.ub_dir, ub_filename))
-                                for key, value in ub_data.items():
-                                    # adding a checker to avoid re-creating class attributes, make the code faster
-                                    if hasattr(ub_conf, key):
-                                        setattr(ub_conf, key, value)
-                                    else:
-                                        ub_conf = make_dataclass(
-                                            "UbConf", fields=[(key, Any, field(default=None))], bases=(ub_conf,)
-                                        )
-                                        setattr(ub_conf, key, value)
-                            # look into tmp folder just in case
-                            elif ub_filename in os.listdir(os.path.join(self.ub_dir, "tmp")):
-                                ub_data = spice_reader.read_spice_ubconf(os.path.join(self.ub_dir, ub_filename))
-                                for key, value in ub_data.items():
-                                    # adding a checker to avoid re-creating class attributes, make the code faster
-                                    if hasattr(ub_conf, key):
-                                        setattr(ub_conf, key, value)
-                                    else:
-                                        ub_conf = make_dataclass(
-                                            "UbConf", fields=[(key, Any, field(default=None))], bases=(ub_conf,)
-                                        )
-                                        setattr(ub_conf, key, value)
-                            else:
-                                logger.warning("Can't find %s, please double check UBMatrix data", ub_filename)
-
-            rawmetadata = make_dataclass(
-                "RawMetaData", fields=[("others", str, field(default=None))], bases=(rawmetadata,)
-            )
-            setattr(rawmetadata, "others", others)
-
-            scan = Scan(
-                data=rawdata,
-                metadata=rawmetadata,
-                error_message=error_message,
-                ubconf=ub_conf,
-            )
-            scan_list[filename] = scan
-        return scan_list
diff --git a/prototype/library/FileSystem/Facilities/load_psi.py b/prototype/library/FileSystem/Facilities/load_psi.py
deleted file mode 100644
index c15e7b5cf..000000000
--- a/prototype/library/FileSystem/Facilities/load_psi.py
+++ /dev/null
@@ -1,122 +0,0 @@
-"""PSI data loader."""
-
-import logging
-import os
-from typing import Iterable, Optional
-
-logger = logging.getLogger("TAVI")
-
-
-class LoadPSI:
-    """
-    Loader for NIST triple-axis spectrometer data.
-
-    This class provides utilities to read SPICE-formatted data files produced
-    at NIST. It supports loading
-    either an explicit list of data files or all files within a specified
-    directory. Metadata, numeric arrays, and UB matrix configurations are
-    parsed into structured dataclasses (`RawData`, `RawMetaData`, `UbConf`)
-    and organized into a `TaviProject`.
-
-    Args:
-        data_folder (str | PathLike):
-            Directory containing SPICE data files. Used if `data_files` is not provided.
-        data_files (Iterable[str] | None):
-            Optional explicit list of filenames to load. If `None`, all files
-            in `data_folder` are processed.
-        ub_dir (str | PathLike | None):
-            Optional path to a UBConf directory. If not provided, the loader
-            searches for a `UBConf` folder adjacent to `data_folder`.
-
-    Methods:
-        score() -> float:
-            Return a heuristic score for how likely the directory corresponds
-            to ORNL data. Currently returns a placeholder value (100).
-        load() -> TaviProject:
-            Public entry point to load data files into a `TaviProject`.
-        _load_files() -> TaviProject:
-            Internal method implementing the actual parsing and data
-            organization logic.
-
-    """
-
-    def __init__(
-        self,
-        data_folder: Optional[os.PathLike | str],
-        data_files: Optional[Iterable[str]] = None,
-        ub_dir: Optional[os.PathLike | str] = None,
-    ) -> None:
-        """Init."""
-        self.data_folder = data_folder
-        self.data_files = data_files
-        self.ub_dir = ub_dir
-
-    def score(self) -> float:
-        """Score."""
-        return 0
-
-    def load(self) -> None:
-        """
-        Load SPICE data files into a TaviProject.
-
-        This method serves as the main entry point for reading triple-axis
-        spectrometer (SPICE) data. It gathers data files from either:
-
-        - `self.data_files` if a list of files is explicitly provided, or
-        - all files in `self.data_folder` if no list is given.
-
-        Each file is parsed into numeric arrays and metadata, dynamically mapped
-        onto `RawData`, `RawMetaData`, and (if applicable) `UbConf` dataclasses.
-        These are assembled into `Scan` objects, which are collected into a
-        `TaviProject`.
-
-        Returns:
-            TaviProject: A project object containing all loaded scans, indexed by filename.
-
-        """
-        return self._load_files()
-
-    def _load_files(self) -> None:
-        """
-        Load SPICE data files into a TaviProject.
-
-        This function reads each SPICE data file from either the provided list
-        of `data_files` or from the `data_folder` directory. For each file, it:
-
-        1. Uses `spice_reader.read_spice_datafile()` to extract:
-           - numeric data arrays
-           - column names
-           - metadata
-           - additional information
-           - error messages
-
-        2. Dynamically generates `RawData` and `RawMetaData` dataclasses with
-           attributes inferred from the file contents. Attribute names are
-           sanitized (e.g., replacing `-`, `.`, or whitespace with `_`) and
-           guarded against invalid Python identifiers.
-
-        3. Handles one-dimensional numeric data gracefully by converting scalars
-           to 1D numpy arrays.
-
-        4. Processes metadata entries. If a "ubconf" key is present, the
-           corresponding UB matrix configuration file is searched for in the
-           `ub_dir`, or in a `UBConf` subfolder adjacent to the data folder.
-           If found, the UB configuration is read using
-           `spice_reader.read_spice_ubconf()` and stored in a dynamically
-           generated `UbConf` dataclass.
-
-        5. Constructs a `Scan` object containing:
-           - the populated `RawData` instance
-           - the populated `RawMetaData` instance
-           - the UB configuration (if available)
-           - column names
-           - error messages
-           - other auxiliary information
-
-        6. Stores the `Scan` object in a `TaviProject`, keyed by the filename.
-
-        Returns:
-            TaviProject: A project object containing all scans indexed by filename.
-
-        """
-        pass
diff --git a/prototype/library/FileSystem/load_manager.py b/prototype/library/FileSystem/load_manager.py
deleted file mode 100644
index 110d21dbf..000000000
--- a/prototype/library/FileSystem/load_manager.py
+++ /dev/null
@@ -1,118 +0,0 @@
-"""Load manager."""
-
-import logging
-import os
-from typing import Iterable, Optional
-
-from tavi.library.FileSystem.Facilities.load_ansto import LoadANSTO
-from tavi.library.FileSystem.Facilities.load_frmii import LoadFRMII
-from tavi.library.FileSystem.Facilities.load_hzb import LoadHZB
-from tavi.library.FileSystem.Facilities.load_nist import LoadNIST
-from tavi.library.FileSystem.Facilities.load_ornl import LoadORNL
-from tavi.library.FileSystem.Facilities.load_psi import LoadPSI
-from tavi.library.FileSystem.tavi_class_factory import Scan
-
-logger = logging.getLogger("TAVI")
-
-
-class LoadManager:
-    """
-    TAVI file management system.
-
-    - Normalizes user input (folder and files) and resolves paths.
-    - Ranks likely facility using facility-provided scoring functions.
-    - Loads data through the chosen facility loader.
-
-    Parameters
-    ----------
-    data_folder : str | os.PathLike | None
-        Folder path containing data files (optional if `data_file` is provided).
-    data_file : str | os.PathLike | Iterable[str | os.PathLike] | None
-        A single file or an iterable of files.
-    facility : str | None
-        If provided, bypass ranking and force this facility (must be supported).
-
-    """
-
-    # currently supported facilities
-    supported_facilities = ["ORNL", "ANSTO", "ILL", "PSI", "NIST", "HZB", "FRMII"]
-
-    def __init__(
-        self,
-        data_folder: Optional[os.PathLike | str] = None,
-        data_files: Optional[os.PathLike | str | Iterable[os.PathLike | str]] = None,
-        ub_dir: Optional[os.PathLike] = None,
-        facility: Optional[str] = None,
-    ) -> None:
-        """Init load manager."""
-        self.data_folder = data_folder
-        self.data_files = data_files
-        self.ub_dir = ub_dir
-        self.facility = facility
-
-    # TO DO
-    def rank_facility(self) -> None:
-        """
-        Determine and set the most likely facility using plugin score functions.
-
-        Returns
-        -------
-        str
-            The selected facility name.
-
-        """
-        facility_score = dict()
-        for facility in self.supported_facilities:
-            match facility:
-                case "ORNL":
-                    facility_score[facility] = LoadORNL(
-                        data_folder=self.data_folder, data_files=self.data_files, ub_dir=self.ub_dir
-                    ).score()
-                case "ANSTO":
-                    facility_score[facility] = LoadANSTO(
-                        data_folder=self.data_folder, data_files=self.data_files, ub_dir=self.ub_dir
-                    ).score()
-                case "ILL":
-                    facility_score[facility] = LoadANSTO(
-                        data_folder=self.data_folder, data_files=self.data_files, ub_dir=self.ub_dir
-                    ).score()
-                case "PSI":
-                    facility_score[facility] = LoadPSI(
-                        data_folder=self.data_folder, data_files=self.data_files, ub_dir=self.ub_dir
-                    ).score()
-                case "NIST":
-                    facility_score[facility] = LoadNIST(
-                        data_folder=self.data_folder, data_files=self.data_files, ub_dir=self.ub_dir
-                    ).score()
-                case "HZB":
-                    facility_score[facility] = LoadHZB(
-                        data_folder=self.data_folder, data_files=self.data_files, ub_dir=self.ub_dir
-                    ).score()
-                case "FRMII":
-                    facility_score[facility] = LoadFRMII(
-                        data_folder=self.data_folder, data_files=self.data_files, ub_dir=self.ub_dir
-                    ).score()
-        self.facility = max(facility_score, key=facility_score.get)
-
-    def load(self) -> dict[str, Scan, None]:
-        """Load the either a folder or a single file or a list of files and returns the TaviProject class."""
-        # if self.facility is None, call the ranking system
-        if not self.facility:
-            self.rank_facility()
-        match self.facility:
-            case "ORNL":
-                return LoadORNL(data_folder=self.data_folder, data_files=self.data_files, ub_dir=self.ub_dir).load()
-        return None
-            # TO DO: extend to other facilities
-            # case "ILL":
-            # return load_ill.load(self.data_folder, self.data_files)
-            # case "ANSTO":
-            # return load_ansto.load(self.data_folder, self.data_files)
-            # case "PSI":
-            # return load_psi.load(self.data_folder, self.data_files)
-            # case "NIST":
-            # return load_nist.load(self.data_folder, self.data_files)
-            # case "MLZ":
-            # return load_ill.load(self.data_folder, self.data_files)
-            # case "FRMII":
-            # return load_frmii.load(self.data_folder, self.data_files)
diff --git a/prototype/library/FileSystem/spice_reader.py b/prototype/library/FileSystem/spice_reader.py
deleted file mode 100644
index fd3cc9c0d..000000000
--- a/prototype/library/FileSystem/spice_reader.py
+++ /dev/null
@@ -1,181 +0,0 @@
-"""Spice reader."""
-
-# -*- coding: utf-8 -*-
-import os
-import xml.etree.ElementTree as ET
-from typing import Any
-
-import numpy as np
-
-
-def read_spice_datafile(file_name: str) -> tuple:
-    """
-    Read an ascii generated by spice, and returns a header structure and a data table.
-
-    Args:
-        file_name (str): a string containing the filename
-
-    Returns:
-        data (np.ndarray): an array containing all columns/rows
-        metadata (dict): a dictionary containing information from the commented lines.
-        col_names (tuple): name of each column in spice_data
-        others (tuple): unrecogonized lines
-        error_messages(tuple): contains line of error message such as unreachable motor positions
-
-    """
-    with open(file_name, encoding="utf-8") as f:
-        all_content = f.readlines()
-    headers = [line.strip() for line in all_content if "#" in line]
-    index_col_name = headers.index("# col_headers =")
-    col_names = headers[index_col_name + 1].strip("#").split()
-    # remove the dot before it causes problem
-    # index_of_pt = col_names.index("Pt.")
-    # col_names[index_of_pt] = "Pt"
-    metadata_list = headers[:index_col_name]
-    error_messages = headers[index_col_name + 2 :]
-
-    index_sum_count = [i for i, header in enumerate(headers) if header.startswith("# Sum of Counts =")]
-    # in case "Sum of Counts" doesn't exist
-    # happens to the last scan after beam is down
-    if len(index_sum_count) != 0:
-        metadata_list += headers[index_sum_count[0] :]
-        error_messages = error_messages[: index_sum_count[0] - len(headers)]
-
-    metadata = {}
-    others = []
-
-    for metadata_entry in metadata_list:
-        line = metadata_entry.strip("# ")
-
-        if "completed" in line or "stopped" in line:  # last line
-            parts = line.split(" ")
-            end_time = parts[3] + " " + parts[0] + " " + parts[1]
-            metadata.update({"end_time": end_time})
-        # elif line[-1] == "=":  # empty line
-        #     unused.append(line[:-2])  # remove  " ="
-        elif "=" in line:  # useful line
-            parts = line.split("=")
-            key = parts[0].strip()
-            val = "=".join(parts[1:])[1:]  # remove the first space character
-            metadata.update({key: val})
-        else:  # how did you get here?
-            others.append(line)
-    # others = tuple(others)
-
-    if metadata.get("preset_type") == "countfile":  # HB1 in polarization mode
-        countfile = []
-        for metadata_entry in metadata_list:
-            if metadata_entry.startswith("# countfile"):
-                _, val = metadata_entry.split("=")
-                countfile.append(val.strip())
-        metadata.update({"countfile": ", ".join(countfile)})
-    data = np.genfromtxt(file_name, comments="#")
-
-    return (data, tuple(col_names), metadata, tuple(others), tuple(error_messages))
-
-
-def read_spice_ubconf(ub_file_name: str) -> dict:
-    """
-    Read ub info from UBConf.
-
-    Args:
-        ub_file_name (str): a string containing the filename.
-
-    Returns:
-        dict of ub meta data.
-
-    """
-    ubconf: dict[str, Any] = {}
-    with open(ub_file_name, "r", encoding="utf-8") as f:
-        all_content = f.readlines()
-
-    if all_content[0] == "[UBMode]\n":
-        for idx, line in enumerate(all_content):
-            if line.strip() == "":
-                continue  # skip if empty
-            elif line.strip()[0] == "[":
-                continue  # skiplines like "[xx]"
-            key, val = line.strip().split("=")
-
-            if key == "Mode":
-                mode_name = all_content[idx - 1].strip()
-                if mode_name == "[UBMode]":
-                    ubconf.update({"UBMode": int(val)})
-                elif mode_name == "[AngleMode]":
-                    ubconf.update({"AngleMode": int(val)})
-            elif "," in val:  # string of vector to array
-                ubconf.update({key: np.array([float(v) for v in val.strip('"').split(",")])})
-            elif val == '""':  # no value
-                pass
-            else:  # float
-                ubconf.update({key: float(val)})
-    else:  # xml junk from C#
-        tree = ET.parse(ub_file_name)
-        root = tree.getroot()
-        for matrix in root.findall("matrix"):
-            ub_matrix = matrix.attrib["matrix"].split(" ")
-        ubconf.update({"UBMatrix": np.array([float(ub_matrix[i]) for i in range(9)])})
-    return ubconf
-
-
-def _create_spicelogs(path_to_scan_file: str) -> dict:
-    """Read in SPICE data, return a dictionary containing metadata and data columns."""
-    (data, col_names, metadata, others, error_messages) = read_spice_datafile(path_to_scan_file)
-    *_, file_name = path_to_scan_file.split("/")
-    instrument_str, *_ = file_name.split("_")
-    # write SPICElogs attributes
-    attrs_dict = {"instrument": instrument_str}
-    for k, v in metadata.items():
-        attrs_dict.update({k: v})
-    if len(error_messages) != 0:
-        attrs_dict.update({"Error Messages": error_messages})
-    if len(others) != 0:
-        attrs_dict.update({"Others": others})
-
-    # write SPICElogs datasets
-    dataset_dict = {}
-    spice_data_shape = data.shape
-    if len(spice_data_shape) == 1:  # 1 row only
-        if spice_data_shape[0] != 0:
-            for idx, col_header in enumerate(col_names):
-                # convert to ndarray if one point only
-                dataset_dict.update({col_header: np.array([data[idx]])})
-        else:  # ignore if empty
-            pass
-    elif len(spice_data_shape) == 2:  # nomarl data with multiple rows
-        # print(scan_num)
-        # print(spice_data.shape)
-        for idx, col_header in enumerate(col_names):
-            dataset_dict.update({col_header: data[:, idx]})
-    spicelogs = {"metadata": attrs_dict}
-    spicelogs.update(dataset_dict)
-
-    scan_path = os.path.abspath(path_to_scan_file)
-    (*folder_path, _, _) = scan_path.split("/")
-
-    ub_file_name = metadata["ubconf"]
-    # clean up the mess DAO made
-    if "\\" in ub_file_name:  # ubconf can be a Windows path in some scans
-        ub_file = ub_file_name.split("\\")[-1]
-    elif "/" in ub_file_name:  # ubconf can be a Windows path in some scans
-        ub_file = ub_file_name.split("/")[-1]
-    else:
-        ub_file = ub_file_name
-
-    ub_file_path = os.path.join("/", *folder_path, "UBConf", ub_file)
-    ub_temp_file_path = os.path.join("/", *folder_path, "UBConf", "temp", ub_file)
-
-    if os.path.isfile(ub_file_path):
-        ub_conf_dict = {"file_path": ub_file_path}
-    elif os.path.isfile(ub_temp_file_path):
-        ub_conf_dict = {"file_path": ub_temp_file_path}
-    else:
-        ub_conf_dict = {"file_path": ""}
-        print(f"Cannot find UB file {metadata['ubconf']}")
-    ubconf = read_spice_ubconf(ub_file_path)
-    for k, v in ubconf.items():
-        ub_conf_dict.update({k: v})
-
-    spicelogs.update({"ub_conf": ub_conf_dict})
-
-    return spicelogs
diff --git a/prototype/library/FileSystem/tavi_class_factory.py b/prototype/library/FileSystem/tavi_class_factory.py
deleted file mode 100644
index 77f28d4e7..000000000
--- a/prototype/library/FileSystem/tavi_class_factory.py
+++ /dev/null
@@ -1,41 +0,0 @@
-"""Tavi data scan class."""
-
-from dataclasses import dataclass
-from typing import Optional
-
-@dataclass
-class RawData:
-    """Declare dataclass for type hints."""
-    pass
-
-@dataclass
-class RawMetaData:
-    """Declare dataclass for type hints."""
-    pass
-
-@dataclass
-class Scan:
-    """
-    Tavi scan data class.
-
-    Represents a single scan within a Tavi project, containing both raw measurement
-    data and associated metadata.
-
-    Attributes:
-        data (RawData): Numerical measurement arrays collected during the scan
-            (e.g., motor positions, detector counts, temperatures).
-        metadata (RawMetaData): Descriptive information about the scan
-            (e.g., experiment details, instrument settings, sample information).
-        column_names (tuple): Ordered names of data columns in `data`, typically
-            matching measurement channels or parameters.
-        error_message (tuple): Messages or warnings associated with the scan,
-            such as instrument errors or data quality issues.
-        others (tuple): Miscellaneous or auxiliary information related to the scan
-            that does not fit into `data` or `metadata`.
-
-    """
-
-    data: dataclass
-    metadata: dataclass
-    ubconf: Optional[dataclass]
-    error_message: tuple
diff --git a/prototype/library/combine_data.py b/prototype/library/combine_data.py
deleted file mode 100644
index 66e42117a..000000000
--- a/prototype/library/combine_data.py
+++ /dev/null
@@ -1,90 +0,0 @@
-"""Combine data."""
-
-from typing import Optional
-
-import numpy as np
-from scipy.stats import binned_statistic
-
-from tavi.library.FileSystem.tavi_class_factory import Scan
-
-
-class CombineManager:
-    """Combine data manager."""
-
-    def __init__(self, target: list[Scan], background: Optional[list[Scan]] = []) -> None:
-        """Init combine data."""
-        self.target = target
-        self.background = background
-
-    def combine_1d(
-        self, axis: tuple[str, str], step: float, range: Optional[tuple[float, float]] = None
-    ) -> tuple[
-        np.ndarray,  # statistics
-        np.ndarray,  # bin_edges
-        np.ndarray,  # binnumber
-        list[float],  # bin_center
-        np.ndarray,  # new_x
-        np.ndarray,  # new_y
-    ]:
-        """
-        Combine 1D data from multiple scans into a binned representation.
-
-        This method aggregates the selected `x` and `y` fields across all scans
-        in `self.target`, sorts the combined arrays, estimates statistical
-        uncertainties, and computes binned statistics using
-        `scipy.stats.binned_statistic`.
-
-        Args:
-        axis (tuple[str, str]):
-            A pair `(x_axis, y_axis)` specifying attribute names of each
-          scan’s data object to extract.
-        step (float):
-            Suggested bin width. If `range` is provided, this is used to compute
-            the number of bins. If not provided, a default bin count is used.
-        range (tuple[float, float], optional):
-            Lower and upper bounds for binning. Passed to `binned_statistic`.
-
-        Returns:
-        tuple:
-            A tuple containing:
-
-            - `statistics` (`np.ndarray`): Sum of `y` values in each bin.
-            - `bin_edges` (`np.ndarray`): Bin edge positions.
-            - `binnumber` (`np.ndarray`): Bin index assignment per input point.
-            - `bin_center` (`list[float]`): Midpoint of each bin.
-            - `new_x` (`np.ndarray`): Combined and sorted x-values.
-            - `new_y` (`np.ndarray`): Combined and sorted y-values.
-
-        """
-        x_axis, y_axis = axis
-        new_x, new_y = np.array([]), np.array([])
-        for scan in self.target:
-            x = getattr(scan.data, x_axis)
-            y = getattr(scan.data, y_axis)
-            new_x = np.append(new_x, x)
-            new_y = np.append(new_y, y)
-
-        # sort based on x
-        ind = np.argsort(new_x)
-        new_y = new_y[ind]
-        new_x = new_x[ind]
-        new_err = np.sqrt(new_y)
-
-        # calculate number of bins as default intake by scipy.binned_statistic
-        if range:
-            number_of_bins = (max(range) - min(range)) / step
-        number_of_bins = 0
-        statistics, bin_edges, binnumber = binned_statistic(new_x, new_y, statistic="sum", bins=10, range=range)
-        bin_center = [(bin_edges[i - 1] + bin_edges[i]) / 2 for i in range(1, len(bin_edges))]
-        return statistics, bin_edges, binnumber, bin_center, new_x, new_y
-
-    # def _equal_rebin_1d(self, x, y, err):
-    #     return np.histogram2d(x,y)
-
-    def combine_2d() -> None:
-        """Combine 2d data."""
-        pass
-
-    def _equal_bins() -> None:
-        """Equal bins."""
-        pass
diff --git a/prototype/library/filter.py b/prototype/library/filter.py
deleted file mode 100644
index 851a763ef..000000000
--- a/prototype/library/filter.py
+++ /dev/null
@@ -1,137 +0,0 @@
-"""Tavi filter."""
-
-from ast import Set
-from enum import Enum
-from typing import Optional
-from venv import logger
-
-from tavi.library.FileSystem.tavi_class_factory import Scan
-
-
-class Operations(Enum):
-    """Define filter operations."""
-
-    CONTAINS = "contains"
-    NOTCONTAIN = "notcontain"
-    IS = "is"
-    ISNOT = "isnot"
-    EQUAL = "=="
-    NOTEQUAL = "!="
-    LESS = "<"
-    LESSEQUAL = "<="
-    GREATER = ">"
-    GREATEREUQAL = ">="
-
-
-class Logic(Enum):
-    """Define filter logic."""
-
-    AND = "and"
-    OR = "OR"
-
-
-class Category(Enum):
-    """Define data category."""
-
-    DATA = "data"
-    METADATA = "metadata"
-
-
-class Filter:
-    """
-    Filter tavi data based on keyword, conditions, and_or and tol.
-
-    Arg:
-    scans: the class that holds the loaded scan data, meta data, ubconf etc. Defined in TaviProject
-    conditions: a string of filter conditions. keyword + operation + value.
-                example: "title+contains+temp", "sample_temp + < + 100". If the conditions is: contains, notcontain,
-                then we look in scans.metadata. If the conditions is: <, >, <=, >=, ==, !=, then we look in scans.data.
-    """
-
-    def __init__(
-        self,
-        scan_list: dict[str, Scan],
-        conditions: Optional[list[Operations]] = None,
-        and_or: Optional[Logic] = None,
-        tol: float = 0.01,  # this can be put into a TAVI config json file as filter equal tolerance
-    ) -> None:
-        """Init filter."""
-        self.scan_list = scan_list
-        self.conditions = conditions
-        self.and_or = and_or
-        self.tol = tol
-        self.output = []
-
-    def filter_data(self) -> None:
-        """Decide where to look for data (data, meta data, ubconf) and perform and/or operation."""
-        if self.conditions:
-            for condition in self.conditions:
-                keyword, action, value = condition
-                if action in [Operations.CONTAINS, Operations.NOTCONTAIN, Operations.IS, Operations.ISNOT]:
-                    self.output.append(self._condition_factory(keyword, value, action, Category.METADATA))
-                else:
-                    self.output.append(self._condition_factory(keyword, value, action, Category.DATA))
-
-            match self.and_or:
-                case Logic.OR:
-                    return sorted(set().union(*self.output))
-                case Logic.AND:
-                    return sorted(set.intersection(*map(set, self.output)))
-                case _:
-                    logger.error("Logic operation not accepted!")
-
-    def _condition_factory(self, keyword: str, value: float, condition: Operations, category: Category) -> Set:
-        """Abstract factory that returns the filtered results based on the keyword, value, condition and category."""
-        tmp_output = set()
-        if category == Category.METADATA:
-            for filename, scan in self.scan_list.items():
-                if hasattr(scan.metadata, keyword):
-                    att = scan.metadata
-                elif hasattr(scan.ubconf, keyword):
-                    att = scan.ubconf
-                else:
-                    logger.log("No matching entry with", keyword)
-                # search meta data and ubconf
-                match condition:
-                    case Operations.CONTAINS:
-                        if value in getattr(att, keyword):
-                            tmp_output.add(filename)
-                    case Operations.NOTCONTAIN:
-                        if value not in getattr(att, keyword):
-                            tmp_output.add(filename)
-                    case Operations.IS:
-                        if value == getattr(att, keyword):
-                            tmp_output.add(filename)
-                    case Operations.ISNOT:
-                        if value != getattr(att, keyword):
-                            tmp_output.add(filename)
-        elif category == Category.DATA:
-            value = float(value)
-            for filename, scan in self.scan_list.items():
-                if not hasattr(scan.data, keyword):
-                    logger.log("No matching entry with", keyword)
-                else:
-                    match condition:
-                        case Operations.EQUAL:
-                            if value + self.tol >= max(getattr(scan.data, keyword)) and value - self.tol <= min(
-                                getattr(scan.data, keyword)
-                            ):
-                                tmp_output.add(filename)
-                        case Operations.NOTEQUAL:
-                            if value + self.tol < min(getattr(scan.data, keyword)) or value - self.tol > max(
-                                getattr(scan.data, keyword)
-                            ):
-                                tmp_output.add(filename)
-                        case Operations.GREATER:
-                            if min(getattr(scan.data, keyword)) > value:
-                                tmp_output.add(filename)
-                        case Operations.GREATEREUQAL:
-                            if min(getattr(scan.data, keyword)) >= value:
-                                tmp_output.add(filename)
-                        case Operations.LESS:
-                            if max(getattr(scan.data, keyword)) < value:
-                                tmp_output.add(filename)
-                        case Operations.LESSEQUAL:
-                            if min(getattr(scan.data, keyword)) <= value:
-                                tmp_output.add(filename)
-        return tmp_output
diff --git a/prototype/library/tavi_data.py b/prototype/library/tavi_data.py
deleted file mode 100644
index b6c808d28..000000000
--- a/prototype/library/tavi_data.py
+++ /dev/null
@@ -1,86 +0,0 @@
-"""Tavi data."""
-
-from dataclasses import field
-from typing import Any
-
-import numpy as np
-
-from tavi.library.FileSystem.tavi_class_factory import Scan
-
-
-class TaviData:
-    """
-    Manage all data and workflows for a complete TAVI project.
-
-    A container class for managing a complete TAVI project, including
-    raw TAS (triple-axis spectrometer) experimental data, processed data,
-    filtering operations, fitting, and plotting management.
-
-    The `TaviProject` serves as the central data structure for organizing
-    experimental scans and coordinating workflows such as loading, filtering,
-    combining, fitting, and visualizing data. It acts as a high-level interface
-    to link raw data, metadata, and analysis pipelines in TAVI.
-
-    Attributes:
-        scans (dict[str, Scan]):
-            A mapping from scan identifiers (e.g., filenames or scan numbers)
-            to their corresponding `Scan` objects, which hold raw data and metadata.
-
-        CombineDataPtr (dict[str, np.ndarray]):
-            Stores merged or aggregated data from multiple scans for analysis.
-
-        filtered_data (dict[str, np.ndarray]):
-            Stores scan data after user-applied filters (e.g., Q/E cuts, masks).
-
-        view_selected_data (dict[str, Any]):
-            Holds user-selected data for visualization purposes.
-
-        process_selected_data (dict[str, Any]):
-            Holds user-selected data for processing workflows.
-
-        fit_manager (dict[str, Any]):
-            A container for fitting models, results, and related configurations.
-
-        plot_manager (dict[str, Any]):
-            A container for managing plotting sessions, styles, and figures.
-
-    Methods:
-        load_scans(data_folder, data_files, ub_dir=None, facility=None):
-            Load scans from disk using the `LoadManager`. Populates `self.scans`.
-
-        load_tavi():
-            (Placeholder) Load a serialized TAVI project file.
-
-        save_tavi():
-            (Placeholder) Save the current TAVI project to disk.
-
-        filter_scans():
-            (Placeholder) Apply filters to raw scan data and store results.
-
-        combine_data():
-            (Placeholder) Combine multiple scans into `combined_data`.
-
-        fit_data():
-            (Placeholder) Perform fitting routines on selected datasets.
-
-        plot_data():
-            (Placeholder) Generate plots of scan or processed data.
-
-    """
-
-    def __init__(
-        self,
-        rawdataptr: dict[str, Scan] = field(default_factory=dict),
-        combinedataptr: dict[str, np.array] = field(default_factory=dict),
-        process_selected_data: list[str] = [],  # mouse selection
-        show_selected_data: dict = {},  # display
-        fitptr: dict[str, Any] = field(default_factory=dict),
-        plotptr: dict[str, Any] = field(default_factory=dict),
-    ) -> None:
-        """Init tavi data attributes."""
-        self.rawdataptr = rawdataptr
-        self.combinedataptr = combinedataptr
-        self.process_selected_data = process_selected_data
-        self.show_selected_data = show_selected_data
-        self.fitptr = fitptr
-        self.plotptr = plotptr
diff --git a/prototype/library/tavi_project.py b/prototype/library/tavi_project.py
deleted file mode 100644
index ef95f433d..000000000
--- a/prototype/library/tavi_project.py
+++ /dev/null
@@ -1,155 +0,0 @@
-"""Tavi Project."""
-
-import os
-from typing import Iterable, Optional
-
-from tavi.library.FileSystem.load_manager import LoadManager
-from tavi.library.filter import Filter, Logic, Operations
-from tavi.library.tavi_data import TaviData
-
-
-class TaviProject:
-    """
-    Central container for managing a full TAVI project workflow.
-
-    The `TaviProject` class provides a high-level interface for loading,
-    filtering, processing, and analyzing triple-axis spectrometer (TAS) data.
-    It acts as the core object for managing raw scans, metadata, selected data,
-    and later processing steps such as combining, fitting, and plotting.
-
-    Internally, `TaviProject` owns a `TaviData` object, which stores and
-    organizes all scan-related information (raw and processed).
-
-    Typical usage involves:
-        1. Loading raw scan files into the project with `load_scans`.
-        2. Selecting subsets of scans or points with `select_scans`.
-        3. Performing transformations such as combining or fitting.
-        4. Visualizing or exporting results.
-
-    Attributes:
-        tavi_data (TaviData):
-            The main data container that stores scan lists, processed data,
-            and user selections (for viewing or modeling).
-
-    Notes:
-        - The `load_scans` method uses a `LoadManager` backend for parsing
-          facility-specific file formats (e.g., ORNL, ILL, ISIS).
-        - Scan filtering is handled by the `Filter` class with logical
-          conditions and operations defined in `tavi_model.filter`.
-        - Future methods (`load_tavi`, `save_tavi`, `combine_data`,
-          `fit_data`, `plot_data`) will extend project persistence,
-          advanced analysis, and visualization.
-
-    """
-
-    def __init__(self) -> None:
-        """Init tavi data."""
-        self.tavi_data = TaviData()
-
-    # --------------------Load Manager-------------------------------------
-    def load_scans(
-        self,
-        data_folder: Optional[os.PathLike | str] = None,
-        data_files: Optional[os.PathLike | str | Iterable[os.PathLike | str]] = None,
-        ub_dir: Optional[os.PathLike] = None,
-        facility: Optional[str] = None,
-    ) -> None:
-        """
-        Load raw TAS (triple-axis spectrometer) scan files into the project.
-
-        This method uses the `LoadManager` to read one or more scan files
-        from the specified directory and populate the `scans` attribute with
-        `Scan` objects containing raw data, metadata, and UB matrix information.
-
-        Attributes:
-            data_folder (os.PathLike | str, optional):
-                Path to the directory containing the scan files.
-                If not provided, defaults to the current working directory.
-
-            data_files (os.PathLike | str | Iterable[os.PathLike | str], optional):
-                One or more scan file names to load from the given `data_folder`.
-                Can be a single filename, a `PathLike` object, or an iterable of file paths.
-
-            ub_dir (os.PathLike, optional):
-                Path to the directory containing UB matrix configuration files.
-                Used to associate orientation matrices with the scans if available.
-
-            facility (str, optional):
-                Identifier for the facility (e.g., "ORNL", "ILL", "ISIS") that
-                produced the data. Allows facility-specific loading behavior.
-
-        Returns:
-            None
-                The method updates the `scans` attribute in place.
-
-        """
-        self.tavi_data.rawdataptr = LoadManager(
-            data_folder=data_folder, data_files=data_files, ub_dir=ub_dir, facility=facility
-        ).load()
-
-    # TO DO
-    def load_tavi(self) -> None:
-        """Load tavi project."""
-        pass
-
-    # TO DO
-    def save_tavi(self) -> None:
-        """Save tavi project."""
-        pass
-
-    # TO DO
-    def select_scans(
-        self,
-        filter_name: Optional[str] = None,
-        conditions: Optional[list[Operations]] = None,
-        and_or: Optional[Logic] = None,
-        category: Optional[str] = None,
-        tol: float = 0.01,
-    ) -> None:
-        pass
-        # """Select scans."""
-        # filtered_data = Filter(self.tavi_data.scan_list, conditions=conditions, and_or=and_or, tol=tol).filter_data()
-        # match category:
-        #     case "view":
-        #         self.tavi_data.show_selected_data[filter_name] = filtered_data
-        #     case "model":
-        #         self.tavi_data.process_selected_data = filtered_data
-        #     case _:
-        #         self.tavi_data.show_selected_data[filter_name] = filtered_data
-
-    # TO DO
-    def combine_data(self) -> None:
-        """Combine data."""
-        pass
-
-    # TO DO
-    def fit_data(self) -> None:
-        """Fit data."""
-        pass
-
-    # TO DO
-    def plot_data(self) -> None:
-        """Plot data."""
-        pass
-
-
-# if __name__ == "__main__":
-#     current_directory = os.getcwd()
-#     filepath = os.path.join(current_directory, "test_data", "exp424", "Datafiles")
-#     # files = ["CG4C_exp0424_scan0041.dat", "CG4C_exp0424_scan0042.dat"]
-#     TaviProj = TaviProject()
-
-#     TaviProj.load_scans(filepath)
-
-#     filename = "CG4C_exp0424_scan0042.dat"
-#     TaviProj.select_scans(
-#         filter_name="scan_contains_42", conditions=([["scan", Operations.CONTAINS, "42"]]), and_or=Logic.OR
-#     )
-
-#     TaviProj.select_scans(filter_name="filter2", conditions=([["scan", Operations.CONTAINS, "4"]]), and_or=Logic.OR)
-#     print(TaviProj.tavi_data.show_selected_data)
-#   print(type(TaviProj.scans[filename].metadata.scan))
-#   print(TaviProj.scans[filename].ubconf)
-#   print(TaviProj.scans[filename].data.Pt)
-#   print(TaviProj.scans[filename].error_message)
-#   print(TaviProj.scans[filename].metadata.time)
diff --git a/prototype/mainwindow.py b/prototype/mainwindow.py
deleted file mode 100644
index 8da045cd5..000000000
--- a/prototype/mainwindow.py
+++ /dev/null
@@ -1,80 +0,0 @@
-"""Main Qt window"""
-
-import threading
-
-from qtpy.QtWidgets import QHBoxLayout, QPushButton, QVBoxLayout, QWidget
-from tavi.model_interface.tavi_project_interface import TaviProjectProxy
-from tavi.model_interface.template_model_interface import TemplateModelProxy
-from tavi.tavi_model.tavi_project_model import TaviProject
-from tavi.tavi_model.template_model import TemplateModel
-from tavi.tavi_presenter.load_presenter import LoadPresenter
-from tavi.tavi_presenter.menu_presenter import MenuPresenter
-from tavi.tavi_presenter.metadata_presenter import MetaDataPresenter
-from tavi.tavi_presenter.template_presenter import TemplatePresenter
-from tavi.tavi_view.load_view import LoadView
-from tavi.tavi_view.menu_view import MainMenuBar
-from tavi.tavi_view.metadata_view import MetaDataView
-from tavi.tavi_view.template_view import TemplateView
-
-from tavi.help.help_model import help_function
-
-
-class MainWindow(QWidget):
-    """Main widget"""
-
-    def __init__(self, parent=None):
-        """Constructor"""
-        super().__init__(parent)
-
-        print(f"main GUI running on {threading.current_thread().name}")
-        ### Create widgets here ###
-        # initialize view
-
-        #!!!!!!!!!!!!!!!!!!!!
-        # self.load_view = load_view
-        # self.load_view.setParent(self)
-        #!!!!!!!!!!!!!!!!!!!!
-
-        load_view = LoadView(self)
-        metadata_view = MetaDataView(self)
-        random_view = TemplateView(self)
-
-        # initialize model/Proxy
-        tavi_dummy_model = TaviProject()
-        tavi_dummy_model_proxy = TaviProjectProxy(tavi_dummy_model)
-
-        random_model = TemplateModel()
-        random_model_proxy = TemplateModelProxy(random_model)
-
-        # pass proxy to presenter
-        self.load_presenter = LoadPresenter(load_view, tavi_dummy_model_proxy)
-        self.metadata_presenter = MetaDataPresenter(metadata_view, tavi_dummy_model_proxy)
-        self.random_presenter = TemplatePresenter(random_view, random_model_proxy)
-
-        ### Set the layout
-        layout = QVBoxLayout()
-        menu_bar = MainMenuBar(self)
-        layout.setMenuBar(menu_bar)
-        self.menu_presenter = MenuPresenter(menu_bar, tavi_dummy_model)
-
-        layout.addWidget(load_view)
-        layout.addWidget(metadata_view)
-        layout.addWidget(random_view)
-        ### Create bottom interface here ###
-
-        # Help button
-        help_button = QPushButton("Help")
-        help_button.clicked.connect(self.handle_help)
-
-        # Set bottom interface layout
-        hor_layout = QHBoxLayout()
-        hor_layout.addWidget(help_button)
-        layout.addLayout(hor_layout)
-
-        self.setLayout(layout)
-
-        # register child widgets to make testing easier
-        self.load_view = load_view
-
-    def handle_help(self):
-        help_function(context="tavi_View")
diff --git a/prototype/model_interface/tavi_project_interface.py b/prototype/model_interface/tavi_project_interface.py
deleted file mode 100644
index 90d818fa2..000000000
--- a/prototype/model_interface/tavi_project_interface.py
+++ /dev/null
@@ -1,24 +0,0 @@
-import abc
-
-from tavi.multithreading.proxy import Proxy
-
-
-class TaviProjectInterface(metaclass=abc.ABCMeta):
-    @abc.abstractmethod
-    def set_selected_scan(self):
-        pass
-
-    @abc.abstractmethod
-    def get_selected_metadata(self):
-        pass
-
-    @abc.abstractmethod
-    def load_manager(self):
-        pass
-
-    @abc.abstractmethod
-    def load(self):
-        pass
-
-
-TaviProjectProxy = Proxy(TaviProjectInterface)
diff --git a/prototype/model_interface/template_model_interface.py b/prototype/model_interface/template_model_interface.py
deleted file mode 100644
index 8cbc269ad..000000000
--- a/prototype/model_interface/template_model_interface.py
+++ /dev/null
@@ -1,12 +0,0 @@
-import abc
-
-from tavi.multithreading.proxy import Proxy
-
-
-class TemplateModelInterface(metaclass=abc.ABCMeta):
-    @abc.abstractmethod
-    def get_next_file(self):
-        pass
-
-
-TemplateModelProxy = Proxy(TemplateModelInterface)
diff --git a/prototype/multithreading/proxy.py b/prototype/multithreading/proxy.py
deleted file mode 100644
index 3446b8b9c..000000000
--- a/prototype/multithreading/proxy.py
+++ /dev/null
@@ -1,32 +0,0 @@
-from concurrent.futures import ThreadPoolExecutor
-from typing import Type, TypeVar
-
-# include this in a config file
-num_of_workers = 1
-
-T = TypeVar("T")
-
-
-def Proxy(_type: Type[T]):
-    def __init__(self, host: T):
-        self.host = host
-
-    abstract_methods = getattr(_type, "__abstractmethods__", set())
-
-    namespace = {"__init__": __init__}
-
-    def make_proxy_method(method_name: str):
-        def executeOnWorker(self, *args, **kwargs):
-            with ThreadPoolExecutor(max_workers=num_of_workers) as executor:
-                host_method = getattr(self.host, method_name)
-                fut = executor.submit(host_method, *args, **kwargs)
-                return fut.result()
-
-        executeOnWorker.__name__ = method_name
-        return executeOnWorker
-
-    for name in abstract_methods:
-        namespace[name] = make_proxy_method(name)
-
-    ProxyClass = type(f"Proxy{_type.__name__}", (_type,), namespace)
-    return ProxyClass
diff --git a/prototype/prototype_templates/__main__.py b/prototype/prototype_templates/__main__.py
deleted file mode 100644
index dcdfc64ee..000000000
--- a/prototype/prototype_templates/__main__.py
+++ /dev/null
@@ -1,10 +0,0 @@
-# from tavi.model_interface.tavi_project_interface import TaviProjectInterface
-# from tavi.prototype.main_presenter import MainPresetner()
-
-# def main_execute(*args):
-#     self.tavi_project_model_proxy = TaviProjectInterfaceProxy()
-
-#     main_presnter = MainPresenter(dict_of_models)
-
-# if __name__ == "__main__":
-#     main_execute()
diff --git a/prototype/prototype_templates/file_menu_presenter.py b/prototype/prototype_templates/file_menu_presenter.py
deleted file mode 100644
index 95949761c..000000000
--- a/prototype/prototype_templates/file_menu_presenter.py
+++ /dev/null
@@ -1,8 +0,0 @@
-# class FileMenuPresenter:
-#     def __init__(self, exit_routine):
-#         self.exit_routine = exit_routine
-#         self._view = FileMenuView()
-#         self._view.setup_callback_exit(self.exit)
-
-#     def exit(self):
-#         self.exit_routine()
diff --git a/prototype/prototype_templates/file_menu_view.py b/prototype/prototype_templates/file_menu_view.py
deleted file mode 100644
index da748640f..000000000
--- a/prototype/prototype_templates/file_menu_view.py
+++ /dev/null
@@ -1,21 +0,0 @@
-# from qtpy.QtWidgets import QAction
-
-
-# class FileMenuView(QMenu):
-#     """
-#     Initialize the main menu bar, create all file-related actions, and connect
-#     them to internal handlers.
-
-#     Parameters
-#     ----------
-#     parent : QWidget, optional
-#         Parent widget, typically the main window.
-#     """
-
-#     super().__init__(parent=None)
-
-#     self.exit_action = QAction("Exit", self)
-#     self.addAction(self.exit_action)
-
-#     def setup_callback_exit(self, callback) -> None:
-#         self.exit_action.triggered.connect(callback)
diff --git a/prototype/prototype_templates/main_presenter.py b/prototype/prototype_templates/main_presenter.py
deleted file mode 100644
index d51e2305e..000000000
--- a/prototype/prototype_templates/main_presenter.py
+++ /dev/null
@@ -1,13 +0,0 @@
-# import ...
-
-# class MainPresenter:
-#     def __init__(self, model_dict):
-
-#         self.file_menu_presenter = FileMenuPresenter(self.exit, model)
-
-#         self.view = MainWindowView(self.file_menu_presenter.view,.....,) # sub qtwidgets init?
-#         self.view.addMenu(self.file_menu_presenter.view)
-
-#     def exit(self):
-#         # future implement of save dirty model
-#         pass
diff --git a/prototype/prototype_templates/main_view.py b/prototype/prototype_templates/main_view.py
deleted file mode 100644
index e69de29bb..000000000
diff --git a/prototype/prototype_templates/menubar_view.py b/prototype/prototype_templates/menubar_view.py
deleted file mode 100644
index e69de29bb..000000000
diff --git a/prototype/prototype_templates/presenter_model_init.py b/prototype/prototype_templates/presenter_model_init.py
deleted file mode 100644
index e69de29bb..000000000
diff --git a/prototype/prototype_templates/view_init.py b/prototype/prototype_templates/view_init.py
deleted file mode 100644
index e69de29bb..000000000
diff --git a/prototype/tavi_model/tavi_project_model.py b/prototype/tavi_model/tavi_project_model.py
deleted file mode 100644
index 5ab7b8db8..000000000
--- a/prototype/tavi_model/tavi_project_model.py
+++ /dev/null
@@ -1,137 +0,0 @@
-from __future__ import annotations
-
-import os
-from concurrent.futures import ThreadPoolExecutor, as_completed
-
-from tavi.EventBroker.event_broker import EventBroker
-from tavi.EventBroker.event_type import Event, meta_data, scan_uuid, selected_uuid
-from tavi.model_interface.tavi_project_interface import TaviProjectInterface
-
-
-class TaviProject(TaviProjectInterface):
-    """
-    Concrete implementation of the `TaviProjectInterface` that manages the state
-    of a TAVI project, including loaded files, selected scans, and metadata.
-    This class functions as a **singleton**, ensuring a single shared project
-    state across the application.
-
-    TaviProject participates in TAVI's event-driven architecture by publishing
-    events when scans are loaded, selected, or updated. Event types include:
-
-    - `scan_uuid`: emitted after loading files from a directory
-    - `selected_uuid`: emitted when the user selects a scan
-    - `meta_data`: emitted when metadata for the selected scan is retrieved
-
-    The class also performs threaded file loading using `ThreadPoolExecutor` to
-    avoid blocking the GUI.
-
-    Attributes
-    ----------
-    file_list : list[str]
-        All files loaded into the current TAVI project.
-    temp_file_list : list[str]
-        Temporary list of files produced during a load operation, typically sorted
-        and used for UI updates.
-    selected_scan : str or None
-        Filename of the scan currently selected by the user.
-    view_slected_file : Any
-        Placeholder for future view state tracking.
-    _event_broker : EventBroker
-        Shared event broker used for broadcasting updates.
-    _total_files : int
-        Total number of files to load during the last load operation.
-    _loaded_files : int
-        Count of how many files have been processed so far.
-    _instance : TaviProject
-        Singleton instance of this class.
-    _initiated : bool
-        Tracks whether `__init__` has already been executed for the singleton.
-
-    """
-
-    _event_broker = EventBroker()
-    _total_files = 0
-    _loaded_files = 0
-    _instance = None
-    _initiated = False
-
-    def __new__(cls, *args, **kwargs):
-        """
-        Enforce singleton behavior for the TaviProject instance.
-
-        Returns
-        -------
-        TaviProject
-            The single shared instance of the project.
-
-        """
-        if cls._instance is None:
-            cls._instance = super().__new__(cls)
-        return cls._instance
-
-    def __init__(self):
-        """
-        Initialize the project state.
-
-        This initializer only runs once due to the `_initiated` flag. Subsequent
-        instantiations return the same object without reinitializing fields.
-
-        Sets up file lists, selection state, and metadata placeholders.
-        """
-        if not self.__class__._initiated:
-            self.file_list = []
-            self.temp_file_list = []
-            self.view_slected_file = None
-            self.selected_scan = None
-            self.__class__._initiated = True
-
-    def send(self, event: Event) -> None:
-        """Generic send functions to publish events to EventBroker()"""
-        self._event_broker.publish(event)
-
-    def set_selected_scan(self, filename: str) -> None:
-        """Sets the selected filename in model and publish a "selected_uuid" event."""
-        self.selected_scan = filename
-        self.send(selected_uuid(selected_uuid=self.selected_scan))
-        self.get_selected_metadata()
-
-    def get_selected_metadata(self) -> None:
-        """
-        Prototypical business logic to extract the index of the selected file in TaviProject.
-        It then sends a "meata_data" event to trigger meta data view update.
-        """
-        index = self.file_list.index(self.selected_scan)
-        self.send(meta_data(meta_data_dict={self.selected_scan: index}))
-
-    def load_manager(self, filename: str) -> str:
-        """Dummy file to test python multithreading"""
-        return filename
-
-    def load(self, folder: str) -> None:
-        """
-        Prototypical load function that using multithreading to simply append file names in
-        TaviProject and send a "scan_uuid" event. This can be replaced by "load_manager" in
-        tavi_library later.
-        """
-        self.temp_file_list = []
-        completed_batch = []
-        self._total_files = len(os.listdir(folder))
-        entries = os.listdir(folder)
-        with ThreadPoolExecutor(max_workers=min(32, os.cpu_count())) as ex:
-            futures = [ex.submit(self.load_manager, name) for name in entries]
-            for fut in as_completed(futures):
-                result = fut.result()
-                completed_batch.append(result)
-                if len(completed_batch) >= 10:
-                    self.file_list.extend(completed_batch)
-                    self.temp_file_list.extend(completed_batch)
-                    self._loaded_files += len(completed_batch)
-                    completed_batch.clear()
-
-            if completed_batch:
-                self.file_list.extend(completed_batch)
-                self.temp_file_list.extend(completed_batch)
-                self._loaded_files += len(completed_batch)
-        self.temp_file_list.sort()
-        event = scan_uuid(self.temp_file_list)
-        self.send(event)
diff --git a/prototype/tavi_model/template_model.py b/prototype/tavi_model/template_model.py
deleted file mode 100644
index 0733803fe..000000000
--- a/prototype/tavi_model/template_model.py
+++ /dev/null
@@ -1,79 +0,0 @@
-from __future__ import annotations
-
-from tavi.EventBroker.event_broker import EventBroker
-from tavi.EventBroker.event_type import Event, template_data
-from tavi.model_interface.template_model_interface import TemplateModelInterface
-from tavi.tavi_model.tavi_project_model import TaviProject
-
-
-class TemplateModel(TemplateModelInterface):
-    """
-    a template implementation of a secondary model that listens to updates in TaviProject
-    model. When a file is selected, TaviProject model emits a "selected_uuid" event that
-    will trigger "get_next_file"(registered in template_presenter.py), which will then creates
-    a "template_data" event that triggers update of a UI component in "template_view.py".
-
-    Attributes
-    ----------
-    event_broker : EventBroker
-        Broker used to publish template-related events such as `template_data`.
-    tavi_project : TaviProject
-        Singleton project model used to access global project state, such as
-        the list of loaded files.
-    next_file : str
-        The computed next filename (set after calling `get_next_file`).
-
-    """
-
-    def __init__(self):
-        """Initialize the template model and bind to the TAVI project singleton."""
-        self.event_broker = EventBroker()
-        self.tavi_project = TaviProject()
-
-    def send(self, event: Event):
-        """
-        Publish an event through the model's internal event broker.
-
-        Parameters
-        ----------
-        event : Event
-            The event instance to publish (e.g., a `template_data` event).
-
-        """
-        self.event_broker.publish(event)
-
-    def get_next_file(self, current_selected_file):
-        """
-        A prototypical implementation of a fake business logic that parse a file
-        name and get next file name. Can be replaced with other functions.
-
-        Parameters
-        ----------
-        current_selected_file : Event
-            An event object containing the attribute `selected_uuid`, which
-            holds the filename of the currently selected scan.
-
-        Event Emitted
-        -------------
-        template_data
-            With field `template_data=<new filename>`.
-
-        """
-        import threading
-
-        print(f"Running get_next_file on {threading.current_thread().name}")
-        current_selected_file = current_selected_file.selected_uuid
-        if current_selected_file:
-            filename = current_selected_file.split("_")
-            new_name = []
-            for name in filename:
-                if name.startswith("scan"):
-                    file_number = name.strip("scan").strip(".dat")
-                    file_number = int(file_number)
-                    new_name.append("scan" + str(file_number + 1) + ".dat")
-                else:
-                    new_name.append(name)
-            self.next_file = "_".join(new_name)
-        event = template_data(template_data=self.next_file)
-        print(self.tavi_project.file_list.index(current_selected_file))
-        self.send(event)
diff --git a/prototype/tavi_presenter/load_presenter.py b/prototype/tavi_presenter/load_presenter.py
deleted file mode 100644
index fd38c224e..000000000
--- a/prototype/tavi_presenter/load_presenter.py
+++ /dev/null
@@ -1,64 +0,0 @@
-from __future__ import annotations
-
-from typing import TYPE_CHECKING
-
-from tavi.EventBroker.event_broker import EventBroker
-from tavi.EventBroker.event_type import scan_uuid
-
-if TYPE_CHECKING:
-    from tavi.model_interface.tavi_project_interface import TaviProjectInterface
-    from tavi.tavi_view.load_view import LoadView
-
-
-class LoadPresenter:
-    """
-    Presenter responsible for coordinating interactions between the LoadView and
-    the TaviProjectInterface model during data-loading workflows in TAVI.
-
-    The "scan_uuid" event type is pre-registered here in EventBroker()to refresh
-    the UI when scans are loaded.
-
-    Parameters
-    ----------
-    view : LoadView
-        The view component responsible for displaying load-related UI elements
-        (tree views, file lists, click handling, etc.).
-    model : TaviProjectInterface
-        The project-level model interface that manages scans, metadata, and
-        selected-scan state.
-
-    Attributes
-    ----------
-    _view : LoadView
-        Reference to the associated view for updating UI elements.
-    _model : TaviProjectInterface
-        Reference to the model interface for updating scan selection and project state.
-    event_broker : EventBroker
-        Event broker used for subscribing to application-wide events.
-        "scan_uuid" event type is pre-registered.
-
-    """
-
-    def __init__(self, view: LoadView, model: TaviProjectInterface):
-        super().__init__()
-        """
-        Initialize the presenter and register event handlers.
-
-        This method:
-        - Stores references to the view and model.
-        - Subscribes to `scan_uuid` events from the EventBroker to update the tree view.
-        - Connects the view's "click on a scan" signal to the model-update handler.
-        """
-        self._view = view
-        self._model = model
-        self.event_broker = EventBroker()
-        self.event_broker.register(scan_uuid, self.update_treeview)
-
-        # # click on a scan
-        self._view.setup_callback_click_on_a_scan(self.handle_click_on_a_scan)
-
-    def update_treeview(self, event: scan_uuid) -> None:
-        self._view.update_add_tree_data(event.scan_uuid_list)
-
-    def handle_click_on_a_scan(self, selected_file: str) -> None:
-        self._model.set_selected_scan(selected_file)
diff --git a/prototype/tavi_presenter/menu_presenter.py b/prototype/tavi_presenter/menu_presenter.py
deleted file mode 100644
index caf08571f..000000000
--- a/prototype/tavi_presenter/menu_presenter.py
+++ /dev/null
@@ -1,50 +0,0 @@
-from __future__ import annotations
-
-from typing import TYPE_CHECKING
-
-if TYPE_CHECKING:
-    from tavi.model_interface.tavi_project_interface import TaviProjectInterface
-    from tavi.tavi_view.menu_view import MainMenuBar
-
-
-class MenuPresenter:
-    """
-    Presenter responsible for mediating interactions between the main menu bar
-    (`MainMenuBar`) and the project model (`TaviProjectInterface`).
-
-    Parameters
-    ----------
-    view : MainMenuBar
-        The menu bar view that contains user-triggered actions (e.g., load folder,
-        load files, new project, save, exit).
-    model : TaviProjectInterface
-        The underlying project model that handles loading, saving, and maintaining
-        TAVI project state.
-
-    """
-
-    def __init__(self, view: MainMenuBar, model: TaviProjectInterface):
-        """Initialize the menu presenter and register view-to-presenter callbacks."""
-        super().__init__()
-        self._view = view
-        self._model = model
-        self._view.setup_callback_load_folder(self.handle_load_folder)
-
-    def handle_load_folder(self, data_dir_or_files):
-        """
-        Handle folder-loading requests from the view.
-
-        This method is triggered when the user selects a folder via the menu
-        bar. The view provides a list of selected paths (typically a single
-        folder), and the presenter forwards the first entry to the model's
-        loading routine.
-
-        Parameters
-        ----------
-        data_dir_or_files : list[str]
-            A list containing one or more filesystem paths. Only the first entry
-            is used, as Qt's `QFileDialog` returns a list even when selecting a
-            single folder.
-
-        """
-        self._model.load(folder=data_dir_or_files[0])
diff --git a/prototype/tavi_presenter/metadata_presenter.py b/prototype/tavi_presenter/metadata_presenter.py
deleted file mode 100644
index 57582861a..000000000
--- a/prototype/tavi_presenter/metadata_presenter.py
+++ /dev/null
@@ -1,47 +0,0 @@
-from __future__ import annotations
-
-from typing import TYPE_CHECKING
-
-from tavi.EventBroker.event_broker import EventBroker
-from tavi.EventBroker.event_type import meta_data
-
-if TYPE_CHECKING:
-    from tavi.model_interface.tavi_project_interface import TaviProjectInterface
-    from tavi.tavi_view.metadata_view import MetaDataView
-
-
-class MetaDataPresenter:
-    """
-    Presenter responsible for mediating metadata-related updates between the
-    model (`TaviProjectInterface`) and the metadata view (`MetaDataView`).
-
-    This presenter subscribes to the application's event broker and listens for
-    `meta_data` events emitted by the model.
-
-    Attributes
-    ----------
-    _view : MetaDataView
-        The metadata view associated with this presenter.
-    _model : TaviProjectInterface
-        The model providing metadata updates.
-    event_broker : EventBroker
-        The event system used to subscribe to metadata update events.
-    selected_meta_data : dict
-        The last metadata dictionary received from the model.
-
-    """
-
-    def __init__(self, view: MetaDataView, model: TaviProjectInterface):
-        """Initialize the metadata presenter and register for `meta_data` events."""
-        super().__init__()
-        self._view = view
-        self._model = model
-
-        self.event_broker = EventBroker()
-        self.event_broker.register(meta_data, self.update_meta_data)
-
-    def update_meta_data(self, event) -> None:
-        self.selected_meta_data = event.meta_data_dict
-        self._view.update_metadata(
-            f"key is {self.selected_meta_data.keys()}, value is {self.selected_meta_data.values()}"
-        )
diff --git a/prototype/tavi_presenter/template_presenter.py b/prototype/tavi_presenter/template_presenter.py
deleted file mode 100644
index 4236a7114..000000000
--- a/prototype/tavi_presenter/template_presenter.py
+++ /dev/null
@@ -1,72 +0,0 @@
-from __future__ import annotations
-
-from typing import TYPE_CHECKING
-
-from tavi.EventBroker.event_broker import EventBroker
-from tavi.EventBroker.event_type import selected_uuid, template_data
-
-if TYPE_CHECKING:
-    from tavi.model_interface.template_model_interface import TemplateModelInterface
-    from tavi.tavi_view.template_view import TemplateView
-
-
-class TemplatePresenter:
-    """
-    Presenter responsible for coordinating template-related logic between the
-    template view (`TemplateView`) and the template model (`TemplateModelInterface`).
-
-    The presenter subscribes to two key event types emitted through the
-    application's `EventBroker`:
-
-    - `template_data`: emitted when the model produces updated template information.
-      This triggers the presenter's `update()` method, which forwards the new data
-      to the view.
-
-    - `selected_uuid`: emitted when the user selects a scan or dataset. The presenter
-      responds by invoking `model.get_next_file`, which computes the next expected
-      file name or template value. That result is then delivered through a future
-      `template_data` event.
-
-    Attributes
-    ----------
-    _view : TemplateView
-        The view updated by this presenter.
-    _model : TemplateModelInterface
-        The model providing template data and processing user selections.
-    event_broker : EventBroker
-        Event system used to subscribe to application-level updates.
-
-    """
-
-    def __init__(self, view: TemplateView, model: TemplateModelInterface) -> None:
-        """
-        Initialize the template presenter and register event callbacks.
-
-        This method attaches the presenter to two event streams:
-
-        - `template_data`: routed to `self.update`
-        - `selected_uuid`: routed directly to `self._model.get_next_file`
-        """
-        super().__init__()
-        self._view = view
-        self._model = model
-        self.event_broker = EventBroker()
-        self.event_broker.register(template_data, self.update)
-        self.event_broker.register(selected_uuid, self._model.get_next_file)
-
-    def update(self, event: template_data) -> None:
-        """
-        Update the template view with newly produced template data.
-
-        This method is triggered automatically through the `template_data` event.
-        It extracts the template text and forwards it to the view.
-
-        Parameters
-        ----------
-        event : Any
-            Event object containing template information. Expected to provide
-            the attribute `event.template_data : str`, representing the
-            next expected filename or template string.
-
-        """
-        self._view.update_template(event.template_data)
diff --git a/prototype/tavi_view/load_view.py b/prototype/tavi_view/load_view.py
deleted file mode 100644
index d0c39eac8..000000000
--- a/prototype/tavi_view/load_view.py
+++ /dev/null
@@ -1,172 +0,0 @@
-from typing import List, Optional
-
-from qtpy.QtCore import QObject, Qt, Signal
-from qtpy.QtGui import QColor, QFont, QStandardItem, QStandardItemModel
-from qtpy.QtWidgets import (
-    QTreeView,
-    QVBoxLayout,
-    QWidget,
-)
-from tavi.EventBroker.event_type import scan_uuid
-
-
-class _UiBridge(QObject):
-    """
-    Thread-safe bridge to deliver updates on the GUI thread. Qt forbitds modifying
-    UI elements from a different thread. The data needs to be passed as a signal.
-
-    """
-
-    update_tree_signal = Signal(list)
-
-
-class LoadView(QWidget):
-    """Main widget"""
-
-    def __init__(self, parent: Optional["QObject"] = None) -> None:
-        """
-        Constructor for the main widget
-        Args:
-            parent (QObject): Optional parent
-
-        """
-        super().__init__(parent)
-        self.click_on_a_scan_callback = None
-
-        layout = QVBoxLayout()
-        self.setLayout(layout)
-
-        self.tree_widget = TreeViewWidget(self)
-        layout.addWidget(self.tree_widget)
-
-        self.tree_widget.clicked_file_signal.connect(self.pass_selected_file)
-
-        # handle thread safe operations from secondary thread
-        self._bridge = _UiBridge()
-        self._bridge.update_tree_signal.connect(
-            self.tree_widget.add_tree_data,
-            type=Qt.QueuedConnection,  # run safely on GUI thread
-        )
-
-    def setup_callback_click_on_a_scan(self, callback: None) -> None:
-        """Setup call back functions to handle when clicking on a scann."""
-        self.click_on_a_scan_callback = callback
-
-    def pass_selected_file(self, filename: str) -> None:
-        """Invoke the call back with positional input arg."""
-        self.click_on_a_scan_callback(filename)
-
-    def update_add_tree_data(self, event: scan_uuid) -> None:
-        """Invoke update_tree_signal to process data coming in from a different thread."""
-        self._bridge.update_tree_signal.emit(event)
-
-
-class TreeViewWidget(QWidget):
-    """
-    A widget that displays a hierarchical tree view of files or scans and emits a
-    signal when the user selects an item.
-
-    This widget is typically used to show experiment folders and their associated
-    scan files. Items are populated with `add_tree_data()`, and the widget emits
-    `clicked_file_signal` whenever a user selects a child item (i.e., a file).
-
-    Signals
-    -------
-    clicked_file_signal : Signal(str)
-        Emitted when a file (child item) is clicked. The signal carries the file
-        name or identifier associated with the selected tree item.
-
-    Parameters
-    ----------
-    parent : Optional[QObject], default=None
-        Parent widget for proper Qt ownership.
-
-    """
-
-    clicked_file_signal = Signal(str)
-
-    def __init__(self, parent: Optional["QObject"] = None) -> None:
-        """
-        Initialize the tree view widget, configure UI components, and connect
-        selection signals.
-
-        This method:
-        - Creates a vertical layout.
-        - Initializes a `QTreeView` with a hidden header.
-        - Creates a `QStandardItemModel` with an invisible root node.
-        - Connects the view's clicked index signal to `select_file()`.
-        """
-        super().__init__(parent)
-
-        layoutTreeView = QVBoxLayout()
-        self.setLayout(layoutTreeView)
-        self.treeView = QTreeView(self)
-        self.treeView.setHeaderHidden(True)
-        self.treeModel = QStandardItemModel()
-        self.rootNode = self.treeModel.invisibleRootItem()
-
-        layoutTreeView.addWidget(self.treeView)
-
-        self.treeView.clicked.connect(self.select_file)
-
-    def add_tree_data(self, list_of_files: List[str]):
-        """Populate the tree view with a folder node and its associated files."""
-        if "exp" in list_of_files[0]:
-            filename = list_of_files[0].split("_")
-            self.experiment_folder = StandardItem(filename[1], 16, set_bold=True)
-        else:
-            self.experiment_folder = StandardItem("Folder", 16, set_bold=True)
-        self.rootNode.appendRow(self.experiment_folder)
-
-        for file in list_of_files:
-            self.experiment_folder.appendRow(StandardItem(file))
-        self.treeView.setModel(self.treeModel)
-
-    def select_file(self, val):
-        """
-        Handle selection of a tree item and emit a signal if the item represents a
-        file rather than a folder.
-
-        Only child items (files) emit `clicked_file_signal`; the folder node itself
-        does not produce a signal.
-        """
-        if val.parent().isValid():
-            self.clicked_file_signal.emit(val.data())
-
-
-class StandardItem(QStandardItem):
-    """
-    Convenience item class for populating Qt tree and list models with styled text.
-
-    This subclass of `QStandardItem` applies font size, bolding, color, and marks
-    the item as non-editable by default. It is used throughout the tree view for
-    folder and file entries.
-
-    Parameters
-    ----------
-    txt : str, default=""
-        Text to display in the item.
-    font_size : int, default=12
-        Point size for the item's font.
-    set_bold : bool, default=False
-        Whether the item text should be bold.
-    color : QColor, default=QColor(0, 0, 0)
-        Text color to apply to the item.
-
-    """
-
-    def __init__(self, txt="", font_size=12, set_bold=False, color=QColor(0, 0, 0)):
-        """
-        Initialize a styled non-editable `QStandardItem`.
-
-        This method constructs a font object, applies styling, and assigns the
-        formatted text to the underlying item.
-        """
-        super().__init__()
-        fnt = QFont("Open Sans", font_size)
-        fnt.setBold(set_bold)
-
-        self.setEditable(False)
-        self.setForeground(color)
-        self.setFont(fnt)
-        self.setText(txt)
diff --git a/prototype/tavi_view/menu_view.py b/prototype/tavi_view/menu_view.py
deleted file mode 100644
index c3abcfd02..000000000
--- a/prototype/tavi_view/menu_view.py
+++ /dev/null
@@ -1,195 +0,0 @@
-from qtpy.QtWidgets import QAction, QApplication, QFileDialog, QMenuBar
-
-
-class MainMenuBar(QMenuBar):
-    """
-    Main application menu bar for TAVI, providing project and file-loading actions.
-
-    This menu bar defines the standard "File" menu for the TAVI GUI, including:
-    - New Project
-    - Load Project
-    - Load File(s)
-    - Load Folder
-    - Save Project
-    - Exit
-
-    Each menu action triggers a handler method that emits callbacks
-    (registered via `setup_callback_*` methods) which are called in presenters.
-    """
-
-    def __init__(self, parent=None):
-        """
-        Initialize the main menu bar, create all file-related actions, and connect
-        them to internal handlers.
-
-        Parameters
-        ----------
-        parent : QWidget, optional
-            Parent widget, typically the main window.
-
-        """
-        super().__init__(parent)
-        self.load_folder_callback = None
-
-        # ---- File Menu ----
-        file_menu = self.addMenu("File")
-
-        self.new_project_action = QAction("New Project", self)
-        self.load_project_action = QAction("Load Project", self)
-        self.load_file_action = QAction("Load File(s)", self)
-        self.load_folder_action = QAction("Load Folder", self)
-        self.save_action = QAction("Save Project", self)
-        self.exit_action = QAction("Exit", self)
-
-        file_menu.addAction(self.new_project_action)
-        file_menu.addAction(self.load_project_action)
-        file_menu.addAction(self.load_folder_action)
-        file_menu.addAction(self.load_file_action)
-        file_menu.addAction(self.save_action)
-        file_menu.addAction(self.exit_action)
-
-        self.new_project_action.triggered.connect(self.handle_new_project)
-        self.new_project_action.triggered.connect(self.handle_load_project)
-        self.load_folder_action.triggered.connect(self.handle_load_folder)
-        self.load_file_action.triggered.connect(self.handle_load_files)
-        self.save_action.triggered.connect(self.handle_save)
-        self.exit_action.triggered.connect(self.handle_exit)
-
-    # TODO Loading a new taviproject
-    def setup_callback_new_project(self, callback: None) -> None:
-        """
-        Register a callback that is invoked when a new project should be created.
-
-        Parameters
-        ----------
-        callback : Callable
-            Function to be called to initialize a new TAVI project.
-
-        """
-        self.load_file_callback = callback
-
-    def new_project(self) -> None:
-        """
-        Create a new TAVI project.
-        Placeholder logic.
-        """
-        print("TODO: creates a new taviproject")
-
-    def handle_new_project(self) -> None:
-        """
-        Handler for the 'New Project' menu action.
-        Placeholder logic
-        """
-        print("TODO: delete everything in taviproject")
-
-    # TODO Loading a new project
-    def setup_callback_load_project(self, callback: None) -> None:
-        """
-        Register a callback invoked when a project should be loaded.
-
-        Parameters
-        ----------
-        callback : Callable
-            Function called when the 'Load Project' action is triggered.
-
-        """
-        self.load_file_callback = callback
-
-    def load_project(self) -> None:
-        """
-        Load a TAVI project.
-        Placeholder logic.
-        """
-        print("TODO: creates a new taviproject")
-
-    def handle_load_project(self) -> None:
-        """
-        Handler for the 'Load Project' action.
-        Placeholder logic.
-        """
-        print("TODO: delete everything in taviproject")
-
-    # Loading a folder of data
-    def setup_callback_load_folder(self, callback) -> None:
-        """Building callback connections for the load data - set by the presenter"""
-        self.load_folder_callback = callback
-
-    def load_folder(self, folder) -> None:
-        """Pass loaded file through callback connections"""
-        self.load_folder_callback(folder)
-
-    def handle_load_folder(self) -> None:
-        """
-        Opens a system window and allow users to select a folder directory.
-        It executes the "load_folder" function.
-        """
-        dlg = QFileDialog(self, "Select a folder")
-        dlg.setFileMode(QFileDialog.Directory)
-        dlg.setOption(QFileDialog.Option.ShowDirsOnly, False)
-
-        if dlg.exec_():
-            folder = dlg.selectedFiles()  # returns a list
-            self.load_folder(folder)
-
-    # TODO Loading a new file
-    def setup_callback_load_file(self, callback: None) -> None:
-        """
-        Register a callback invoked when files should be loaded.
-
-        Parameters
-        ----------
-        callback : Callable
-            Function that will receive a list of file paths selected by the user.
-
-        """
-        self.load_file_callback = callback
-
-    def load_file(self, list_of_file) -> None:
-        """
-        Load a list of files into the current TAVI project.
-        Placeholder logic.
-        """
-        print("TODO: Loading a list of files")
-
-    def handle_load_files(self) -> None:
-        """
-        Handler for the 'Load File(s)' action.
-        Placeholder logic.
-        """
-        print("TODO: get list of files and call self.load_file to load")
-
-    # TODO Saving TAVI project
-    def setup_callback_save(self, callback: None) -> None:
-        """
-        Register a callback that saves the current TAVI project.
-
-        Parameters
-        ----------
-        callback : Callable
-            Function invoked to serialize and store the project.
-
-        """
-        self.save_callback = callback
-
-    def save(self) -> None:
-        """
-        Save the current TAVI project.
-        Placeholder logic.
-        """
-        print("TODO: save current taviproject")
-
-    def handle_save(self) -> None:
-        """
-        Handler for the 'Save Project' action.
-        Placeholder logic.
-        """
-        print("TODO: get taviproject and write to local disk")
-
-    # Exit
-    def handle_exit(self) -> None:
-        """Exit Tavi"""
-        window = self.window()  # the top-level QMainWindow
-        if window:
-            window.close()
-        else:
-            QApplication.quit()  # fallback
diff --git a/prototype/tavi_view/metadata_view.py b/prototype/tavi_view/metadata_view.py
deleted file mode 100644
index d4b112644..000000000
--- a/prototype/tavi_view/metadata_view.py
+++ /dev/null
@@ -1,123 +0,0 @@
-from typing import Optional
-
-from qtpy.QtCore import QObject, Qt, Signal
-from qtpy.QtWidgets import (
-    QHBoxLayout,
-    QLabel,
-    QLineEdit,
-    QVBoxLayout,
-    QWidget,
-)
-
-
-class _UiBridge(QObject):
-    """
-    Thread-safe bridge to deliver updates on the GUI thread. Qt forbitds modifying
-    UI elements from a different thread. The data needs to be passed as a signal.
-
-    """
-
-    set_metadata_signal = Signal(str)
-
-
-class MetaDataView(QWidget):
-    """
-    Prototypical widget responsible for displaying metadata associated
-    with loaded scans or files.
-
-    Parameters
-    ----------
-    parent : Optional[QObject], default=None
-        Parent widget used for Qt ownership and memory management.
-
-    Attributes
-    ----------
-    metadata_widget : MetaDataWidget
-        The inner widget responsible for displaying filename and related metadata.
-    _bridge : _UiBridge
-        Thread-safe bridge for routing metadata updates to the GUI.
-    display_metadata_callback : Callable or None
-        Placeholder for a presenter-provided callback (future use).
-
-    """
-
-    def __init__(self, parent: Optional["QObject"] = None) -> None:
-        """
-        Constructor for the main widget
-        Args:
-            parent (QObject): Optional parent
-
-        """
-        super().__init__(parent)
-        self.display_metadata_callback = None
-
-        layout = QVBoxLayout()
-        self.setLayout(layout)
-
-        self.metadata_widget = MetaDataWidget(self)
-        layout.addWidget(self.metadata_widget)
-
-        self._bridge = _UiBridge()
-        self._bridge.set_metadata_signal.connect(
-            self.metadata_widget.set_values,
-            type=Qt.QueuedConnection,  # run safely on GUI thread
-        )
-
-    def update_metadata(self, event: None) -> None:
-        """
-        Request a metadata update by emitting the change through the `_UiBridge`.
-
-        This method should be called by the presenter when the model produces
-        new metadata.
-
-        Parameters
-        ----------
-        event : str
-            The metadata value to display. Typically the filename or metadata
-            summary associated with the currently selected scan.
-
-        """
-        self._bridge.set_metadata_signal.emit(event)
-
-
-class MetaDataWidget(QWidget):
-    """
-    Widget responsible for displaying metadata fields (e.g., filename).
-
-    The widget contains a label and a disabled QLineEdit. The presenter or
-    parent view updates its contents through `set_values()`, typically routed
-    via `_UiBridge` to ensure thread safety.
-    """
-
-    def __init__(self, parent: Optional["QObject"] = None) -> None:
-        """
-        Constructor for the metadata widget
-
-        Args:
-            parent (QObject): Optional parent
-
-        """
-        super().__init__(parent)
-        layoutTop = QHBoxLayout()
-        self.setLayout(layoutTop)
-
-        self.filename_label = QLabel("File name:", self)
-        self.filename_edit = QLineEdit(self)
-        self.filename_edit.setStyleSheet("color: black;")
-        self.filename_edit.setEnabled(False)
-        self.filename_label.setBuddy(self.filename_edit)
-
-        layoutTop.addWidget(self.filename_label)
-        layoutTop.addWidget(self.filename_edit)
-
-    def set_values(self, values: str) -> None:
-        """
-        Update the metadata display field.
-
-        Parameters
-        ----------
-        values : str
-            Text to display in the filename field (e.g., the selected scan name).
-
-        """
-        self.filename_edit.setText(values)
diff --git a/prototype/tavi_view/template_view.py b/prototype/tavi_view/template_view.py
deleted file mode 100644
index 6c06fe88f..000000000
--- a/prototype/tavi_view/template_view.py
+++ /dev/null
@@ -1,117 +0,0 @@
-from typing import Optional
-
-from qtpy.QtCore import QObject, Qt, Signal
-from qtpy.QtWidgets import (
-    QHBoxLayout,
-    QLabel,
-    QLineEdit,
-    QVBoxLayout,
-    QWidget,
-)
-from tavi.EventBroker.event_type import template_data
-
-
-class _UiBridge(QObject):
-    """
-    Thread-safe bridge to deliver updates on the GUI thread. Qt forbitds modifying
-    UI elements from a different thread. The data needs to be passed as a signal.
-
-    """
-
-    set_template_signal = Signal(str)
-
-
-class TemplateView(QWidget):
-    """
-    A template of a widget that will react to a secondary model of the TaviProjectModel.
-
-    This view contains a `TemplateWidget` (which provides the actual display UI)
-    and a `_UiBridge` to ensure updates from presenters or background operations
-    are applied safely on the GUI thread.
-
-    Attributes
-    ----------
-    template_widget : TemplateWidget
-        The inner display widget showing the template value.
-    _bridge : _UiBridge
-        Thread-safe event bridge used to route updates to the GUI.
-
-    """
-
-    def __init__(self, parent: Optional["QObject"] = None) -> None:
-        """
-        Initialize the template view, set up layouts, and connect the bridge
-        signal to the template widget’s update method.
-        """
-        super().__init__(parent)
-
-        layout = QVBoxLayout()
-        self.setLayout(layout)
-
-        self.template_widget = TemplateWidget(self)
-        layout.addWidget(self.template_widget)
-
-        self._bridge = _UiBridge()
-        self._bridge.set_template_signal.connect(
-            self.template_widget.set_values,
-            type=Qt.QueuedConnection,
-        )
-
-    def update_template(self, event: template_data) -> None:
-        """
-        Request an update to the displayed template value.
-
-        This method should be called by a presenter when new template information
-        becomes available. It emits the update through `_UiBridge`, ensuring the
-        update executes on the GUI thread.
-
-        Parameters
-        ----------
-        event : str
-            The new template text to display.
-
-        """
-        self._bridge.set_template_signal.emit(event)
-
-
-class TemplateWidget(QWidget):
-    """
-    Widget responsible for displaying a single template field (e.g., the
-    “next file name” that the system expects or will generate).
-
-    The widget consists of a label and a read-only text field that displays the
-    current template value.
-    """
-
-    def __init__(self, parent: Optional["QObject"] = None) -> None:
-        """
-        Constructor for the template widget
-
-        Args:
-            parent (QObject): Optional parent
-
-        """
-        super().__init__(parent)
-        layoutTop = QHBoxLayout()
-        self.setLayout(layoutTop)
-
-        self.filename_label = QLabel("Next file:", self)
-        self.filename_edit = QLineEdit(self)
-        self.filename_edit.setStyleSheet("color: black;")
-        self.filename_edit.setEnabled(False)
-        self.filename_label.setBuddy(self.filename_edit)
-
-        layoutTop.addWidget(self.filename_label)
-        layoutTop.addWidget(self.filename_edit)
-
-    def set_values(self, values: str) -> None:
-        """
-        Update the displayed template value.
-
-        Parameters
-        ----------
-        values : str
-            The template text to display (typically a filename or prefix).
-
-        """
-        self.filename_edit.setText(values)
diff --git a/pyproject.toml b/pyproject.toml
index 8ed044689..bfd31efe5 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -157,6 +157,7 @@ lmfit = ">=1.3.4"
 jupyterlab = ">=4.4.10"
 ipympl = ">=0.9.8"
 mypy = ">=1.19.0"
+ruff = ">=0.14.11,<0.15"
 
 [tool.pixi.pypi-dependencies]
 # PyPI dependencies for the local environment though pixi
@@ -232,3 +233,5 @@ clean-all = { description = "Clean all artifacts", depends-on = [
 ] }
 sync-version = { cmd = 'version=$(python -m versioningit); toml set tool.pixi.package.version "$version" --toml-path pyproject.toml', description = "Sync pyproject.toml version with Git version" }
 reset-version = { cmd = "toml set tool.pixi.package.version \"0.0.0\" --toml-path pyproject.toml", description = "Reset the package version to 0.0.0" }
+# application tasks
+tavi = { cmd = "python -m tavi", description = "Start the TAVI application" }
diff --git a/src/tavi/__main__.py b/src/tavi/__main__.py
index 03530fc1c..5c6b6dbe2 100644
--- a/src/tavi/__main__.py
+++ b/src/tavi/__main__.py
@@ -4,9 +4,9 @@
 
 from qtpy.QtWidgets import QApplication
 
-from tavi.backend.model_interface.TaviProjectInterface import TaviProjectInterface
+from tavi.backend.model.interface.TaviProjectInterface import TaviProjectInterface
 from tavi.configuration import Configuration
-from tavi.frontend.presenters.main_presenter import MainPresenter
+from tavi.frontend.presenter.main_presenter import MainPresenter
 
 
 def execute() -> None:
diff --git a/src/tavi/_version.py b/src/tavi/_version.py
deleted file mode 100644
index db0825728..000000000
--- a/src/tavi/_version.py
+++ /dev/null
@@ -1 +0,0 @@
-__version__ = "0.4.0.dev5"
diff --git a/src/tavi/backend/model/__init__.py b/src/tavi/backend/model/__init__.py
new file mode 100644
index 000000000..1fb7937ed
--- /dev/null
+++ b/src/tavi/backend/model/__init__.py
@@ -0,0 +1 @@
+"""Model Package."""
diff --git a/src/tavi/help/help_model.py b/src/tavi/backend/model/help_model.py
similarity index 100%
rename from src/tavi/help/help_model.py
rename to src/tavi/backend/model/help_model.py
diff --git a/src/tavi/backend/model_interface/TaviProjectInterface.py b/src/tavi/backend/model/interface/TaviProjectInterface.py
similarity index 72%
rename from src/tavi/backend/model_interface/TaviProjectInterface.py
rename to src/tavi/backend/model/interface/TaviProjectInterface.py
index ea1fdfd12..83f383697 100644
--- a/src/tavi/backend/model_interface/TaviProjectInterface.py
+++ b/src/tavi/backend/model/interface/TaviProjectInterface.py
@@ -6,4 +6,4 @@ class TaviProjectInterface:
 
     def print(self) -> None:
         """Print."""
-        print("TODO: Implement model, model_interface, multihreading, model_proxy")
+        print("TODO: Implement model, model.interface, multihreading, model_proxy")
diff --git a/src/tavi/backend/model/interface/model_interface.py b/src/tavi/backend/model/interface/model_interface.py
new file mode 100644
index 000000000..03ef10a7a
--- /dev/null
+++ b/src/tavi/backend/model/interface/model_interface.py
@@ -0,0 +1,7 @@
+"""Model Interface."""
+
+
+class Model:
+    """Base Class for all Models."""
+
+    pass
diff --git a/src/tavi/frontend/presenter/__init__.py b/src/tavi/frontend/presenter/__init__.py
new file mode 100644
index 000000000..ca4b540a1
--- /dev/null
+++ b/src/tavi/frontend/presenter/__init__.py
@@ -0,0 +1 @@
+"""Presenter Package."""
diff --git a/src/tavi/frontend/presenters/file_menu_presenter.py b/src/tavi/frontend/presenter/file_menu_presenter.py
similarity index 93%
rename from src/tavi/frontend/presenters/file_menu_presenter.py
rename to src/tavi/frontend/presenter/file_menu_presenter.py
index 23d972fbd..a4f0c5e89 100644
--- a/src/tavi/frontend/presenters/file_menu_presenter.py
+++ b/src/tavi/frontend/presenter/file_menu_presenter.py
@@ -4,10 +4,10 @@
 
 from typing import TYPE_CHECKING, Any
 
-from tavi.frontend.views.file_menu_view import FileMenu
+from tavi.frontend.view.file_menu_view import FileMenu
 
 if TYPE_CHECKING:
-    from tavi.backend.model_interface.TaviProjectInterface import TaviProjectInterface
+    from tavi.backend.model.interface.TaviProjectInterface import TaviProjectInterface
 
 
 class FileMenuPresenter:
diff --git a/src/tavi/frontend/presenters/main_presenter.py b/src/tavi/frontend/presenter/main_presenter.py
similarity index 83%
rename from src/tavi/frontend/presenters/main_presenter.py
rename to src/tavi/frontend/presenter/main_presenter.py
index 4f2e3d53e..c28d6bcdf 100644
--- a/src/tavi/frontend/presenters/main_presenter.py
+++ b/src/tavi/frontend/presenter/main_presenter.py
@@ -1,8 +1,8 @@
 """Main presenter for tavi."""
 
-from tavi.frontend.presenters.file_menu_presenter import FileMenuPresenter
-from tavi.frontend.views.main_view import TaviView
-from tavi.frontend.views.menubar_view import MainMenuBar
+from tavi.frontend.presenter.file_menu_presenter import FileMenuPresenter
+from tavi.frontend.view.main_view import TaviView
+from tavi.frontend.view.menubar_view import MainMenuBar
 
 
 class MainPresenter:
diff --git a/src/tavi/frontend/view/__init__.py b/src/tavi/frontend/view/__init__.py
new file mode 100644
index 000000000..5102c9452
--- /dev/null
+++ b/src/tavi/frontend/view/__init__.py
@@ -0,0 +1 @@
+"""Frontend Package."""
diff --git a/src/tavi/frontend/views/file_menu_view.py b/src/tavi/frontend/view/file_menu_view.py
similarity index 100%
rename from src/tavi/frontend/views/file_menu_view.py
rename to src/tavi/frontend/view/file_menu_view.py
diff --git a/src/tavi/frontend/views/main_view.py b/src/tavi/frontend/view/main_view.py
similarity index 98%
rename from src/tavi/frontend/views/main_view.py
rename to src/tavi/frontend/view/main_view.py
index 0d5f99d30..5f61b5d3a 100644
--- a/src/tavi/frontend/views/main_view.py
+++ b/src/tavi/frontend/view/main_view.py
@@ -8,7 +8,7 @@
 from qtpy.QtWidgets import QHBoxLayout, QMainWindow, QMenuBar, QMessageBox, QPushButton, QVBoxLayout, QWidget
 
 from tavi import __version__
-from tavi.help.help_model import help_function
+from tavi.backend.model.help_model import help_function
 
 logger = logging.getLogger("TAVI")
 
diff --git a/src/tavi/frontend/views/menubar_view.py b/src/tavi/frontend/view/menubar_view.py
similarity index 100%
rename from src/tavi/frontend/views/menubar_view.py
rename to src/tavi/frontend/view/menubar_view.py
diff --git a/src/tavi/library/__init__.py b/src/tavi/library/__init__.py
new file mode 100644
index 000000000..be11f22a6
--- /dev/null
+++ b/src/tavi/library/__init__.py
@@ -0,0 +1 @@
+"""Library Module."""
diff --git a/src/tavi/library/data/__init__.py b/src/tavi/library/data/__init__.py
new file mode 100644
index 000000000..612d9b8d9
--- /dev/null
+++ b/src/tavi/library/data/__init__.py
@@ -0,0 +1 @@
+"""Data Module."""
diff --git a/src/tavi/library/data/model_response.py b/src/tavi/library/data/model_response.py
new file mode 100644
index 000000000..57f8d1f03
--- /dev/null
+++ b/src/tavi/library/data/model_response.py
@@ -0,0 +1,27 @@
+"""Model Response and its codes."""
+
+from enum import IntEnum
+from typing import Optional
+
+from pydantic import BaseModel
+
+
+class ResponseCode(IntEnum):
+    """
+    `ResponseCode` defines a set of standardized response codes.
+
+    They represent various outcomes of a request. ranging from
+    successful operations (OK) to various levels of errors,
+    including recoverable states and general errors.
+    """
+
+    OK = 200
+    ERROR = 500
+
+
+class ModelResponse(BaseModel):
+    """The response of a model, including what level of success it had."""
+
+    code: ResponseCode
+    # Optional warning message for the user
+    message: Optional[str] = None
diff --git a/src/tavi/meta/__init__.py b/src/tavi/meta/__init__.py
new file mode 100644
index 000000000..da879ef8a
--- /dev/null
+++ b/src/tavi/meta/__init__.py
@@ -0,0 +1 @@
+"""Meta package for the meta code that enables the rest of the package."""
diff --git a/src/tavi/meta/decorators/__init__.py b/src/tavi/meta/decorators/__init__.py
new file mode 100644
index 000000000..d4e33baad
--- /dev/null
+++ b/src/tavi/meta/decorators/__init__.py
@@ -0,0 +1 @@
+"""Custom Decorator package for internal use."""
diff --git a/src/tavi/meta/decorators/singleton.py b/src/tavi/meta/decorators/singleton.py
new file mode 100644
index 000000000..aa82b2dae
--- /dev/null
+++ b/src/tavi/meta/decorators/singleton.py
@@ -0,0 +1,77 @@
+"""Singleton Module."""
+
+from functools import wraps
+from typing import Any, List
+
+_Singleton_instances: List[type] = []
+
+
+def Singleton(orig_cls) -> Any:  # noqa:  ANN001
+    """Make an annotated class instantiate as a Singleton."""
+    orig_new = orig_cls.__new__
+    orig_init = orig_cls.__init__
+    instance = None
+    initialized = False
+
+    @wraps(orig_cls.__init__)
+    def __init__(self, *args, **kwargs) -> None:  # noqa: ANN001, ANN002, ANN003
+        nonlocal initialized
+        if initialized:
+            return
+        initialized = True
+        orig_init(self, *args, **kwargs)
+
+    @wraps(orig_cls.__new__)
+    def __new__(cls, *args, **kwargs) -> Any:  # noqa: ARG001, ANN001, ANN002, ANN003
+        nonlocal instance
+        if instance is None:
+            # this needs to work with object.__new__, which only has only the `cls` arg
+            instance = orig_new(cls)  # , *args, **kwargs)
+        return instance
+
+    def _reset_Singleton(*, fully_unwrap: bool = False) -> None:
+        # Reset the Singleton:
+        #
+        #   * The `@Singleton` decorator is applied at time of import.
+        #   * This method does not _reinitialize_ any existing class instances;
+        #       it just ensures that the next time the `__init__` is called it will
+        #       initialize a new instance.
+        #   * If `fully_unwrap` is set, it is equivalent to removing the `@Singleton` decorator from the class.
+        #
+        #   This method is provided for use by `pytest` fixtures,
+        #     as an alternative to mocking out the `Singleton` entirely.
+        #
+        nonlocal instance
+        nonlocal initialized
+        instance = None
+        initialized = False
+
+        if fully_unwrap:
+            # this should be equivalent to mocking out the decorator
+            orig_cls.__new__ = orig_cls.__new__.__wrapped__
+            orig_cls.__init__ = orig_cls.__init__.__wrapped__
+
+    orig_cls.__new__ = __new__
+    orig_cls.__init__ = __init__
+
+    orig_cls._reset_Singleton = _reset_Singleton
+    global _Singleton_instances
+    _Singleton_instances.append(orig_cls)
+
+    return orig_cls
+
+
+def reset_Singletons(*, fully_unwrap: bool = False) -> None:
+    """Reset all singleton objects."""
+    # Implementation notes:
+    #
+    #   * The `@Singleton` decorator is applied at time of import.
+    #   * This module-scope method does not _reinitialize_ any existing class instances;
+    #       it just ensures that the next time the `__init__`[s] are called they will
+    #       initialize new instances.
+    #   * If `fully_unwrap` is set, it is equivalent to removing the `@Singleton` decorator from all of the classes;
+    #       and, if that approach is taken, it's only necessary to apply this method at `scope="session"`.
+    #
+    global _Singleton_instances
+    for cls in _Singleton_instances:
+        cls._reset_Singleton(fully_unwrap=fully_unwrap)
diff --git a/src/tavi/meta/multithreading/__init__.py b/src/tavi/meta/multithreading/__init__.py
new file mode 100644
index 000000000..56ec44cdd
--- /dev/null
+++ b/src/tavi/meta/multithreading/__init__.py
@@ -0,0 +1 @@
+"""Multithreading module."""
diff --git a/src/tavi/meta/multithreading/proxy.py b/src/tavi/meta/multithreading/proxy.py
new file mode 100644
index 000000000..c1be57080
--- /dev/null
+++ b/src/tavi/meta/multithreading/proxy.py
@@ -0,0 +1,43 @@
+"""Proxy."""
+
+from typing import Any, Callable, Type, TypeVar
+
+from tavi.meta.multithreading.worker_pool import WorkerPool
+
+# include this in a config file
+num_of_workers = 1
+
+T = TypeVar("T")
+
+
+def Proxy(_type: Type[T]) -> type:
+    """Generate a wrapper class that runs method calls to host on a thread."""
+
+    def __init__(self: Any, host: T) -> None:
+        self.host = host
+        self.worker_pool = WorkerPool()
+
+    abstract_methods = getattr(_type, "__abstractmethods__", set())
+
+    namespace = {"__init__": __init__}
+
+    def make_proxy_method(method_name: str) -> Callable:
+        def executeOnWorker(self: T, *args: Any, **kwargs: Any) -> None:
+            host_method = getattr(self.host, method_name)
+            worker = self.worker_pool.create_worker(host_method, *args, **kwargs)
+            self.worker_pool.submit_worker(worker)
+            # TODO: move to debug logger
+            print("sent to worker!")
+            # Models do not return values.
+            # Returning values is synchronous behavior that will freeze the main thread.
+            # They may submit updates via events.
+            # This also helps ensure *all* consumers are synchronized.
+
+        executeOnWorker.__name__ = method_name
+        return executeOnWorker
+
+    for name in abstract_methods:
+        namespace[name] = make_proxy_method(name)
+
+    ProxyClass = type(f"Proxy{_type.__name__}", (_type,), namespace)
+    return ProxyClass
diff --git a/src/tavi/meta/multithreading/signal.py b/src/tavi/meta/multithreading/signal.py
new file mode 100644
index 000000000..bba0a8486
--- /dev/null
+++ b/src/tavi/meta/multithreading/signal.py
@@ -0,0 +1,85 @@
+"""Signal."""
+
+import asyncio
+import inspect
+import logging
+import threading
+import weakref
+from typing import Any, Callable
+
+
+class Signal:
+    """PyQt-like implementation of cross-thread callback communication."""
+
+    def __init__(self, loop: asyncio.AbstractEventLoop) -> None:
+        """Initialize signal with relevant event loop."""
+        self._loop = loop
+        self._loop_thread_id: int | None = None
+        self._slots: list[weakref.ReferenceType] = []
+
+    def bind_loop_thread(self) -> None:
+        """Must be called from inside the running event loop thread."""
+        self._loop_thread_id = threading.get_ident()
+
+    def connect(self, slot: Callable) -> None:
+        """Register a consumer to be emitted to later."""
+        if inspect.ismethod(slot):
+            self._slots.append(weakref.WeakMethod(slot))
+        else:
+            self._slots.append(weakref.ref(slot))
+
+    def emit(self, *args: Any, **kwargs: Any) -> None:
+        """Send data to Signal consumers."""
+        if self._loop_thread_id is None:
+            raise RuntimeError("Signal.bind_loop_thread() was never called.")
+
+        is_loop_thread = threading.get_ident() == self._loop_thread_id
+
+        for ref in list(self._slots):
+            slot = ref()
+            if slot is None:
+                self._slots.remove(ref)
+                continue
+
+            if inspect.iscoroutinefunction(slot):
+                # ALWAYS schedule coroutine slots
+                self._schedule_coroutine(slot, *args, **kwargs)
+            else:
+                if is_loop_thread:
+                    self._invoke_direct(slot, *args, **kwargs)
+                else:
+                    self._invoke_queued(slot, *args, **kwargs)
+
+    # --- internals ---
+
+    def _invoke_direct(self, slot: Callable, *args: Any, **kwargs: Any) -> None:
+        try:
+            slot(*args, **kwargs)
+        except Exception:
+            logging.exception("Signal slot failed (direct)")
+
+    def _invoke_queued(self, slot: Callable, *args: Any, **kwargs: Any) -> None:
+        self._loop.call_soon_threadsafe(
+            self._safe_call,
+            slot,
+            *args,
+            **kwargs,
+        )
+
+    def _schedule_coroutine(self, slot: Callable, *args: Any, **kwargs: Any) -> None:
+        coro = slot(*args, **kwargs)
+
+        def _create_task() -> None:
+            try:
+                asyncio.create_task(coro)
+            except Exception:
+                logging.exception("Signal coroutine slot failed")
+
+        self._loop.call_soon_threadsafe(_create_task)
+
+    @staticmethod
+    def _safe_call(slot: Callable, *args: Any, **kwargs: Any) -> None:
+        try:
+            slot(*args, **kwargs)
+        except Exception:
+            logging.exception("Signal slot failed (queued)")
diff --git a/src/tavi/meta/multithreading/worker_pool.py b/src/tavi/meta/multithreading/worker_pool.py
new file mode 100644
index 000000000..1b95fa0c8
--- /dev/null
+++ b/src/tavi/meta/multithreading/worker_pool.py
@@ -0,0 +1,88 @@
+"""Worker and Worker Pool."""
+
+import asyncio
+from threading import Thread
+from typing import Any, Callable, Dict, List
+
+from tavi.library.data.model_response import ModelResponse, ResponseCode
+from tavi.meta.decorators.singleton import Singleton
+from tavi.meta.multithreading.signal import Signal
+
+# logger = taviLogger.getLogger(__name__)
+
+
+class Worker:
+    """Wrapper for threaded tasks that emits signals and handles errors."""
+
+    target = None
+    args = None
+
+    def __init__(self, loop: asyncio.AbstractEventLoop, target: Callable, *args: Any, **kwargs: Any) -> None:
+        """Initialize worker and setup expected async signals."""
+        super().__init__()
+        self.target = target
+        self.args = args
+        self.kwargs = kwargs
+        self.finished: Signal = Signal(loop)  # None
+
+    def bindSignals(self) -> None:
+        """Bind the signals for use."""
+        self.finished.bind_loop_thread()
+
+    def run(self) -> None:
+        """Long-running task."""
+        results = None
+        self.bindSignals()
+        try:
+            # Expects the return to be wrapped in a ModelResponse
+            results: ModelResponse = self.target(*self.args, **self.kwargs)
+        except Exception as e:  # noqa: BLE001
+            # logger.error(e)
+            # if logger.isEnabledFor(logging.DEBUG):
+            #     # print stacktrace
+            #     import traceback
+
+            #     traceback.print_exc()
+
+            results = ModelResponse(code=ResponseCode.ERROR, message=str(e))
+        self.finished.emit()
+        if not isinstance(results, ModelResponse):
+            raise ValueError("Worker target must return a ModelResponse object.")
+
+
+@Singleton
+class WorkerPool:
+    """Creates and manages threads to run Workers on."""
+
+    max_threads = 8
+    threads: Dict[Worker, Thread] = {}
+    worker_queue: List[Worker] = []
+
+    def __init__(self) -> None:
+        """Set up event loop so that Signals may work correctly."""
+        self.loop = asyncio.new_event_loop()
+
+    def create_worker(self, target: Callable, *args: Any, **kwargs: Any) -> Worker:
+        """Create a worker."""
+        return Worker(self.loop, target, *args, **kwargs)
+
+    def _dequeue_worker(self, worker: Worker) -> None:
+        """Dequeues worker and starts the next in queue if it exists."""
+        self.threads.pop(worker)
+        if len(self.worker_queue) > 0:
+            self.submit_worker(self.worker_queue.pop())
+
+    def submit_worker(self, worker: Worker) -> None:
+        """Queues or submits worker to thread."""
+        if len(self.threads) >= self.max_threads:
+            # add to queue
+            self.worker_queue.append(worker)
+        else:
+            # spawn thread and delegate
+            thread = Thread(target=worker.run)
+            self.threads[worker] = thread
+
+            worker.finished.connect(lambda: self._dequeue_worker(worker))
+
+            # Start the thread
+            thread.start()
diff --git a/tests/unit/meta/multithreading/test_proxy.py b/tests/unit/meta/multithreading/test_proxy.py
new file mode 100644
index 000000000..7fd26fedd
--- /dev/null
+++ b/tests/unit/meta/multithreading/test_proxy.py
@@ -0,0 +1,57 @@
+import abc
+from unittest import mock, TestCase
+
+import pytest
+
+from tavi.meta.multithreading.proxy import Proxy
+
+
+class SampleAbstractClass(metaclass=abc.ABCMeta):
+    @abc.abstractmethod
+    def some_method(self):
+        pass
+
+
+class SampleAbstractClassImpl(SampleAbstractClass):
+    test_var = lambda: True
+
+    def some_method(self):
+        self.test_var()
+
+    def some_non_abstract_method(self):
+        pass
+
+
+SampleAbstractClassProxy = Proxy(SampleAbstractClass)
+
+
+class TestFileOperations(TestCase):
+    def setUp(self):
+        self.inst = SampleAbstractClassProxy(SampleAbstractClassImpl())
+
+    def tearDown(self):
+        pass
+
+    def test_init(self):
+        assert isinstance(self.inst, SampleAbstractClass)
+        assert not isinstance(self.inst, SampleAbstractClassImpl)
+
+        assert isinstance(self.inst.host, SampleAbstractClass)
+        assert isinstance(self.inst.host, SampleAbstractClassImpl)
+
+    def test_method_exec(self):
+        self.inst.host.test_var = mock.Mock()
+        with mock.patch.object(self.inst.host, "test_var", mock.Mock()) as test_var_mock:
+            self.inst.some_method()
+            assert test_var_mock.called
+
+    def test_method_worker_delegation(self):
+        with mock.patch.object(self.inst, "worker_pool", mock.Mock()) as mock_worker_pool:
+            self.inst.some_method()
+            assert mock_worker_pool.create_worker.called
+            assert mock_worker_pool.submit_worker.called
+
+    def test_non_interface_method(self):
+        with pytest.raises(AttributeError, match="object has no attribute"):
+            self.inst.some_non_abstract_method()
+        self.inst.host.some_non_abstract_method()
diff --git a/tests/unit/meta/multithreading/test_signal.py b/tests/unit/meta/multithreading/test_signal.py
new file mode 100644
index 000000000..247106138
--- /dev/null
+++ b/tests/unit/meta/multithreading/test_signal.py
@@ -0,0 +1,197 @@
+import asyncio
+import threading
+import time
+import unittest
+
+from tavi.meta.multithreading.signal import Signal
+
+
+def run_loop_once(loop):
+    loop.call_soon(loop.stop)
+    loop.run_forever()
+
+
+def run_loop(loop, duration=0.05):
+    loop.call_later(duration, loop.stop)
+    loop.run_forever()
+
+
+class TestSignal(unittest.TestCase):
+    def setUp(self):
+        self.loop = asyncio.new_event_loop()
+        asyncio.set_event_loop(self.loop)
+
+    def tearDown(self):
+        self.loop.close()
+        asyncio.set_event_loop(None)
+
+    def test_direct_emit_executes_immediately(self):
+        sig = Signal(self.loop)
+        sig.bind_loop_thread()
+
+        called = []
+
+        def slot(value):
+            called.append((value, threading.get_ident()))
+
+        sig.connect(slot)
+        sig.emit(123)
+
+        self.assertEqual(called, [(123, threading.get_ident())])
+
+    def test_queued_emit_from_worker_thread(self):
+        sig = Signal(self.loop)
+        sig.bind_loop_thread()
+
+        called = []
+
+        def slot(value):
+            called.append((value, threading.get_ident()))
+
+        sig.connect(slot)
+
+        def worker():
+            sig.emit(456)
+
+        t = threading.Thread(target=worker)
+        t.start()
+        t.join()
+
+        self.assertEqual(called, [])
+
+        run_loop(self.loop)
+
+        self.assertEqual(len(called), 1)
+        value, thread_id = called[0]
+        self.assertEqual(value, 456)
+        self.assertEqual(thread_id, threading.get_ident())
+
+    def test_async_slot_direct_requires_running_loop(self):
+        sig = Signal(self.loop)
+        sig.bind_loop_thread()
+
+        called = asyncio.Event()
+
+        async def slot(value):
+            self.assertEqual(value, 1)
+            called.set()
+
+        sig.connect(slot)
+
+        # Schedule emit while loop is running
+        self.loop.call_soon(sig.emit, 1)
+        run_loop(self.loop)
+
+        self.loop.run_until_complete(asyncio.wait_for(called.wait(), timeout=0.5))
+
+    def test_async_slot_from_worker_thread(self):
+        sig = Signal(self.loop)
+        sig.bind_loop_thread()
+
+        called = asyncio.Event()
+
+        async def slot(value):
+            called.set()
+
+        sig.connect(slot)
+
+        def worker():
+            sig.emit(2)
+
+        t = threading.Thread(target=worker)
+        t.start()
+        t.join()
+
+        run_loop(self.loop)
+
+        self.loop.run_until_complete(asyncio.wait_for(called.wait(), timeout=0.5))
+
+    def test_weakref_cleanup(self):
+        sig = Signal(self.loop)
+        sig.bind_loop_thread()
+
+        called = []
+
+        def make_slot():
+            def slot():
+                called.append(1)
+
+            return slot
+
+        slot = make_slot()
+        sig.connect(slot)
+
+        del slot
+
+        sig.emit()
+        run_loop(self.loop)
+
+        self.assertEqual(called, [])
+        self.assertEqual(sig._slots, [])
+
+    def test_slot_order_preserved(self):
+        sig = Signal(self.loop)
+        sig.bind_loop_thread()
+
+        called = []
+
+        def slot1():
+            called.append(1)
+
+        def slot2():
+            called.append(2)
+
+        sig.connect(slot1)
+        sig.connect(slot2)
+
+        sig.emit()
+
+        self.assertEqual(called, [1, 2])
+
+    def test_slot_exception_does_not_break_signal(self):
+        sig = Signal(self.loop)
+        sig.bind_loop_thread()
+
+        called = []
+
+        def bad_slot():
+            raise RuntimeError("boom")
+
+        def good_slot():
+            called.append("ok")
+
+        sig.connect(bad_slot)
+        sig.connect(good_slot)
+
+        sig.emit()
+
+        self.assertEqual(called, ["ok"])
+
+    def test_queued_slot_executes_on_loop_thread(self):
+        sig = Signal(self.loop)
+        sig.bind_loop_thread()
+
+        executed_thread_ids = []
+
+        def slot():
+            executed_thread_ids.append(threading.get_ident())
+
+        sig.connect(slot)
+
+        loop_thread_id = threading.get_ident()
+
+        def worker():
+            # Emit from a non-loop thread
+            sig.emit()
+
+        t = threading.Thread(target=worker)
+        t.start()
+        t.join()
+
+        # Slot should not run until the loop processes events
+        self.assertEqual(executed_thread_ids, [])
+
+        run_loop(self.loop)
+
+        self.assertEqual(len(executed_thread_ids), 1)
+        self.assertEqual(executed_thread_ids[0], loop_thread_id)
diff --git a/tests/unit/meta/multithreading/test_worker_pool.py b/tests/unit/meta/multithreading/test_worker_pool.py
new file mode 100644
index 000000000..bf23e730b
--- /dev/null
+++ b/tests/unit/meta/multithreading/test_worker_pool.py
@@ -0,0 +1,188 @@
+import time
+import threading
+import unittest
+
+
+# -------------------------
+# Minimal Signal test double
+# -------------------------
+
+
+class TestSignal:
+    """
+    Minimal replacement for Signal that synchronously
+    executes connected callbacks.
+    """
+
+    def __init__(self, loop=None):
+        self._callbacks = []
+        self.emitted = False
+        self.loopBound = False
+        self.args = None
+
+    def bind_loop_thread(self):
+        self.loopBound = True
+
+    def connect(self, callback):
+        self._callbacks.append(callback)
+
+    def emit(self, *args):
+        self.emitted = True
+        self.args = args
+        for cb in self._callbacks:
+            cb()
+
+
+# -------------------------
+# TestCase
+# -------------------------
+
+
+class TestWorkerAndWorkerPool(unittest.TestCase):
+    @classmethod
+    def setUpClass(cls):
+        """
+        Patch Signal once for the entire test class,
+        then import the module under test.
+        """
+        import importlib
+        import tavi.meta.multithreading.signal
+
+        cls._original_signal = tavi.meta.multithreading.signal.Signal
+        tavi.meta.multithreading.signal.Signal = TestSignal
+
+        cls.worker_module = importlib.import_module("tavi.meta.multithreading.worker_pool")  # adjust if needed
+        importlib.reload(cls.worker_module)
+
+    @classmethod
+    def tearDownClass(cls):
+        """
+        Restore original Signal implementation.
+        """
+        import tavi.meta.multithreading.signal
+
+        tavi.meta.multithreading.signal.Signal = cls._original_signal
+
+    def setUp(self):
+        """
+        Ensure WorkerPool is reset between tests.
+        """
+        WorkerPool = self.worker_module.WorkerPool
+        pool = WorkerPool()
+        pool.threads.clear()
+        pool.worker_queue.clear()
+
+    # -------------------------
+    # Worker tests
+    # -------------------------
+
+    def test_worker_success_path(self):
+        WorkerPool = self.worker_module.WorkerPool
+        ResponseCode = self.worker_module.ResponseCode
+        ModelResponse = self.worker_module.ModelResponse
+
+        def target(a, b):
+            return ModelResponse(code=ResponseCode.OK, data = a + b)
+
+        worker = WorkerPool().create_worker(target, 2, 3)
+        worker.run()
+
+        self.assertTrue(worker.finished.loopBound)
+        self.assertTrue(worker.finished.emitted)
+
+    def test_worker_exception_path(self):
+        WorkerPool = self.worker_module.WorkerPool
+
+        def target():
+            raise RuntimeError("failure")
+
+        worker = WorkerPool().create_worker(target)
+        worker.run()
+
+        self.assertTrue(worker.finished.emitted)
+
+    # -------------------------
+    # WorkerPool tests
+    # -------------------------
+
+    def test_workerpool_singleton(self):
+        WorkerPool = self.worker_module.WorkerPool
+
+        pool1 = WorkerPool()
+        pool2 = WorkerPool()
+
+        self.assertIs(pool1, pool2)
+
+    def test_workerpool_starts_thread(self):
+        WorkerPool = self.worker_module.WorkerPool
+
+        pool = WorkerPool()
+        pool.max_threads = 1
+
+        ran = threading.Event()
+
+        def target():
+            ran.set()
+            time.sleep(0.05)
+            return "ok"
+
+        worker = pool.create_worker(target)
+        pool.submit_worker(worker)
+
+        self.assertEqual(len(pool.threads), 1)
+
+        ran.wait(timeout=1)
+        time.sleep(0.05)
+
+        self.assertEqual(len(pool.threads), 0)
+
+    def test_workerpool_queues_and_dequeues(self):
+        WorkerPool = self.worker_module.WorkerPool
+
+        pool = WorkerPool()
+        pool.max_threads = 1
+
+        block = threading.Event()
+
+        def slow_target():
+            block.wait()
+            return "slow"
+
+        def fast_target():
+            return "fast"
+
+        w1 = pool.create_worker(slow_target)
+        w2 = pool.create_worker(fast_target)
+
+        pool.submit_worker(w1)
+        pool.submit_worker(w2)
+
+        self.assertEqual(len(pool.threads), 1)
+        self.assertEqual(len(pool.worker_queue), 1)
+
+        block.set()
+        time.sleep(0.1)
+
+        self.assertEqual(len(pool.worker_queue), 0)
+        self.assertEqual(len(pool.threads), 0)
+
+    def test_workerpool_finished_signal(self):
+        WorkerPool = self.worker_module.WorkerPool
+        ResponseCode = self.worker_module.ResponseCode
+        ModelResponse = self.worker_module.ModelResponse
+
+        def target(a, b):
+            return ModelResponse(code=ResponseCode.OK, data = a + b)
+        
+        finishedCalled = False
+        def slot():
+            nonlocal finishedCalled
+            finishedCalled = True
+
+        worker = WorkerPool().create_worker(target, 2, 3)
+        worker.finished.connect(slot)
+        worker.run()
+
+        self.assertTrue(worker.finished.emitted)
+
+        assert finishedCalled
\ No newline at end of file
diff --git a/tests/view_test/test_menu_view.py b/tests/unit/view_test/test_menu_view.py
similarity index 88%
rename from tests/view_test/test_menu_view.py
rename to tests/unit/view_test/test_menu_view.py
index abdd01de8..dd4e4b709 100644
--- a/tests/view_test/test_menu_view.py
+++ b/tests/unit/view_test/test_menu_view.py
@@ -1,5 +1,5 @@
 import pytest
-from tavi.frontend.views.file_menu_view import FileMenu
+from tavi.frontend.view.file_menu_view import FileMenu
 
 
 def test_file_menu_action_labels(qtbot):
@@ -21,4 +21,4 @@ def test_file_menu_action_labels(qtbot):
     assert labels["load_file"] == "Load File(s)"
     assert labels["load_folder"] == "Load Folder"
     assert labels["save"] == "Save Project"
-    assert labels["exit"] == "Exit"
\ No newline at end of file
+    assert labels["exit"] == "Exit"