[Enabler] Modify remove deprecated functionality

[glass-ships]

Description:

This will modify mantid algorithms for the new way of filtering logs as detailed in the design document.

This work centers on changing the algorithms that use the old functionality and convert them to the new, then removing the old functionality.

This enabler will cover steps 11-12 of the "implementation notes" section of the design document.

Outline of activity:

• Deprecate all of the methods used by python and change the calling python
• Remove the old python methods
• Remove all other calls to deprecated C++ methods
• Remove C++ methods
• Update user documentation (example)

[glass-ships]

This issue was migrated from code.ornl.gov.