From ef50f0b46ae93b3188d0e4c03f0e0b46d1a33299 Mon Sep 17 00:00:00 2001 From: IanDMedeiros <80306126+IanDMedeiros@users.noreply.github.com> Date: Wed, 8 May 2024 17:08:59 -0400 Subject: [PATCH] Updated database versions for MiBIG and dbCAN --- funannotate/downloads.json | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/funannotate/downloads.json b/funannotate/downloads.json index b317d03..81453f8 100644 --- a/funannotate/downloads.json +++ b/funannotate/downloads.json @@ -3,16 +3,16 @@ "uniprot": "http://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/complete/uniprot_sprot.fasta.gz", "uniprot-release": "http://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/complete/reldate.txt", "merops": "http://ftp.ebi.ac.uk/pub/databases/merops/current_release/merops_scan.lib", - "dbCAN": "https://bcb.unl.edu/dbCAN2/download/Databases/V11/dbCAN-HMMdb-V11.txt", - "dbCAN-tsv": "https://bcb.unl.edu/dbCAN2/download/Databases/V11/CAZyDB.08062022.fam-activities.txt", - "dbCAN-log": "https://bcb.unl.edu/dbCAN2/download/Databases/V11/readme.txt", + "dbCAN": "https://bcb.unl.edu/dbCAN2/download/Databases/V12/dbCAN-HMMdb-V12.txt", + "dbCAN-tsv": "https://bcb.unl.edu/dbCAN2/download/Databases/V12/CAZyDB.08062022.fam-activities.txt", + "dbCAN-log": "https://bcb.unl.edu/dbCAN2/download/Databases/V12/readme.txt", "pfam": "http://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.hmm.gz", "pfam-tsv": "http://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.clans.tsv.gz", "pfam-log": "http://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam.version.gz", "outgroups": "https://osf.io/r9sne/download?version=1", "repeats": "https://osf.io/vp87c/download?version=1", "go-obo": "http://purl.obolibrary.org/obo/go.obo", - "mibig": "https://dl.secondarymetabolites.org/mibig/mibig_prot_seqs_1.4.fasta", + "mibig": "https://dl.secondarymetabolites.org/mibig/mibig_prot_seqs_3.1.fasta", "interpro": "http://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro.xml.gz", "interpro-tsv": "http://ftp.ebi.ac.uk/pub/databases/interpro/current_release/entry.list", "gene2product": "https://raw.githubusercontent.com/nextgenusfs/gene2product/master/ncbi_cleaned_gene_products.txt" @@ -131,4 +131,4 @@ "embryophyta_odb9" ] } -} \ No newline at end of file +}