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ivan-aksamentovivan-aksamentov
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chore(schemas): regenerate JSON schema files
1 parent ff2de10 commit d53a8c5

12 files changed

+400
-28
lines changed

‎packages/nextclade-schemas/input-pathogen-json.schema.json‎

Lines changed: 30 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -7,8 +7,8 @@
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"schemaVersion": "3.0.0",
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"attributes": {
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"name": "Influenza A H3N2 HA",
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"reference accession": "CY163680",
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"reference name": "A/Wisconsin/67/2005-egg",
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"reference accession": "CY163680",
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"segment": "ha"
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},
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"shortcuts": [
@@ -154,8 +154,7 @@
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"type": "string"
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},
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"attributes": {
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"type": "object",
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"additionalProperties": true
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"$ref": "#/definitions/PathogenAttributes"
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},
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"shortcuts": {
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"type": "array",
@@ -292,6 +291,34 @@
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}
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},
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"definitions": {
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"PathogenAttributes": {
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"description": "Pathogen metadata attributes with recognized keys and extensibility",
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"type": "object",
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"properties": {
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"name": {
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"description": "Human-readable dataset name",
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"type": [
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"string",
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"null"
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]
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},
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"reference name": {
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"description": "Name of the reference sequence",
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"type": [
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"string",
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"null"
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]
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},
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"reference accession": {
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"description": "Accession number of the reference sequence",
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"type": [
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"string",
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"null"
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]
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}
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},
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"additionalProperties": true
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},
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"DatasetMeta": {
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"type": "object",
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"properties": {

‎packages/nextclade-schemas/input-pathogen-json.schema.yaml‎

Lines changed: 22 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -5,8 +5,8 @@ examples:
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- schemaVersion: 3.0.0
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attributes:
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name: Influenza A H3N2 HA
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reference accession: CY163680
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reference name: A/Wisconsin/67/2005-egg
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reference accession: CY163680
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segment: ha
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shortcuts:
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- flu_h3n2_ha_broad
@@ -102,8 +102,7 @@ properties:
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schemaVersion:
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type: string
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attributes:
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type: object
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additionalProperties: true
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$ref: '#/definitions/PathogenAttributes'
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shortcuts:
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type: array
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items:
@@ -171,6 +170,26 @@ properties:
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- $ref: '#/definitions/DatasetMaintenance'
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- type: 'null'
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definitions:
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PathogenAttributes:
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description: Pathogen metadata attributes with recognized keys and extensibility
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type: object
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properties:
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name:
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description: Human-readable dataset name
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type:
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- string
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- 'null'
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reference name:
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description: Name of the reference sequence
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type:
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- string
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- 'null'
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reference accession:
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description: Accession number of the reference sequence
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type:
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- string
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- 'null'
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additionalProperties: true
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DatasetMeta:
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type: object
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properties:

‎packages/nextclade-schemas/internal-dataset-collection-json.schema.json‎

Lines changed: 43 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -96,8 +96,7 @@
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}
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},
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"attributes": {
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"type": "object",
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"additionalProperties": true
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"$ref": "#/definitions/DatasetAttributes"
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},
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"meta": {
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"$ref": "#/definitions/DatasetMeta"
@@ -139,6 +138,48 @@
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}
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}
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},
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"DatasetAttributes": {
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"description": "Dataset metadata attributes with recognized keys and extensibility",
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"type": "object",
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"properties": {
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"name": {
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"description": "Human-readable dataset name",
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"type": [
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"string",
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"null"
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]
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},
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"reference name": {
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"description": "Name of the reference sequence",
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"type": [
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"string",
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"null"
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]
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},
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"reference accession": {
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"description": "Accession number of the reference sequence",
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"type": [
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"string",
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"null"
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]
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},
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"deprecated": {
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"description": "If true, dataset is deprecated and excluded from listings by default. Authors mark a dataset as deprecated to indicate it will no longer be updated or supported. Use `--include-deprecated` CLI flag to show deprecated datasets.",
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"type": [
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"boolean",
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"null"
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]
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},
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"experimental": {
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"description": "If true, dataset is experimental and excluded with `--no-experimental` CLI flag. Authors mark a dataset as experimental when development is still in progress, or if the dataset is incomplete or of lower quality than usual. Use at own risk.",
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"type": [
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"boolean",
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"null"
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]
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}
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},
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"additionalProperties": true
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},
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"DatasetMeta": {
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"type": "object",
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"properties": {

‎packages/nextclade-schemas/internal-dataset-collection-json.schema.yaml‎

Lines changed: 31 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -65,8 +65,7 @@ definitions:
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items:
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type: string
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attributes:
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type: object
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additionalProperties: true
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$ref: '#/definitions/DatasetAttributes'
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meta:
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$ref: '#/definitions/DatasetMeta'
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files:
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anyOf:
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- $ref: '#/definitions/DatasetMaintenance'
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- type: 'null'
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DatasetAttributes:
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description: Dataset metadata attributes with recognized keys and extensibility
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type: object
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properties:
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name:
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description: Human-readable dataset name
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type:
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- string
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- 'null'
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reference name:
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description: Name of the reference sequence
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type:
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- string
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- 'null'
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reference accession:
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description: Accession number of the reference sequence
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type:
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- string
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- 'null'
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deprecated:
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description: If true, dataset is deprecated and excluded from listings by default. Authors mark a dataset as deprecated to indicate it will no longer be updated or supported. Use `--include-deprecated` CLI flag to show deprecated datasets.
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type:
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- boolean
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- 'null'
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experimental:
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description: If true, dataset is experimental and excluded with `--no-experimental` CLI flag. Authors mark a dataset as experimental when development is still in progress, or if the dataset is incomplete or of lower quality than usual. Use at own risk.
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type:
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- boolean
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- 'null'
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additionalProperties: true
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DatasetMeta:
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type: object
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properties:

‎packages/nextclade-schemas/internal-dataset-json.schema.json‎

Lines changed: 43 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -16,8 +16,7 @@
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}
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},
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"attributes": {
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"type": "object",
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"additionalProperties": true
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"$ref": "#/definitions/DatasetAttributes"
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},
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"meta": {
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"$ref": "#/definitions/DatasetMeta"
@@ -59,6 +58,48 @@
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}
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},
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"definitions": {
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"DatasetAttributes": {
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"description": "Dataset metadata attributes with recognized keys and extensibility",
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"type": "object",
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"properties": {
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"name": {
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"description": "Human-readable dataset name",
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"type": [
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"string",
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"null"
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]
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},
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"reference name": {
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"description": "Name of the reference sequence",
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"type": [
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"string",
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"null"
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]
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},
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"reference accession": {
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"description": "Accession number of the reference sequence",
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"type": [
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"string",
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"null"
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]
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},
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"deprecated": {
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"description": "If true, dataset is deprecated and excluded from listings by default. Authors mark a dataset as deprecated to indicate it will no longer be updated or supported. Use `--include-deprecated` CLI flag to show deprecated datasets.",
88+
"type": [
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"boolean",
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"null"
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]
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},
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"experimental": {
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"description": "If true, dataset is experimental and excluded with `--no-experimental` CLI flag. Authors mark a dataset as experimental when development is still in progress, or if the dataset is incomplete or of lower quality than usual. Use at own risk.",
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"type": [
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"boolean",
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"null"
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]
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}
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},
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"additionalProperties": true
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},
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"DatasetMeta": {
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"type": "object",
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"properties": {

‎packages/nextclade-schemas/internal-dataset-json.schema.yaml‎

Lines changed: 31 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -11,8 +11,7 @@ properties:
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items:
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type: string
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attributes:
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type: object
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additionalProperties: true
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$ref: '#/definitions/DatasetAttributes'
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meta:
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$ref: '#/definitions/DatasetMeta'
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files:
@@ -34,6 +33,36 @@ properties:
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- $ref: '#/definitions/DatasetMaintenance'
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- type: 'null'
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definitions:
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DatasetAttributes:
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description: Dataset metadata attributes with recognized keys and extensibility
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type: object
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properties:
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name:
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description: Human-readable dataset name
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type:
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- string
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- 'null'
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reference name:
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description: Name of the reference sequence
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type:
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- string
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- 'null'
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reference accession:
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description: Accession number of the reference sequence
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type:
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- string
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- 'null'
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deprecated:
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description: If true, dataset is deprecated and excluded from listings by default. Authors mark a dataset as deprecated to indicate it will no longer be updated or supported. Use `--include-deprecated` CLI flag to show deprecated datasets.
57+
type:
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- boolean
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- 'null'
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experimental:
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description: If true, dataset is experimental and excluded with `--no-experimental` CLI flag. Authors mark a dataset as experimental when development is still in progress, or if the dataset is incomplete or of lower quality than usual. Use at own risk.
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type:
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- boolean
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- 'null'
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additionalProperties: true
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DatasetMeta:
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type: object
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properties:

‎packages/nextclade-schemas/internal-index-json.schema.json‎

Lines changed: 43 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -120,8 +120,7 @@
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}
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},
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"attributes": {
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"type": "object",
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"additionalProperties": true
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"$ref": "#/definitions/DatasetAttributes"
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},
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"meta": {
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"$ref": "#/definitions/DatasetMeta"
@@ -163,6 +162,48 @@
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}
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}
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},
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"DatasetAttributes": {
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"description": "Dataset metadata attributes with recognized keys and extensibility",
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"type": "object",
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"properties": {
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"name": {
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"description": "Human-readable dataset name",
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"type": [
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"string",
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"null"
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]
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},
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"reference name": {
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"description": "Name of the reference sequence",
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"type": [
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"string",
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"null"
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]
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},
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"reference accession": {
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"description": "Accession number of the reference sequence",
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"type": [
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"string",
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"null"
188+
]
189+
},
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"deprecated": {
191+
"description": "If true, dataset is deprecated and excluded from listings by default. Authors mark a dataset as deprecated to indicate it will no longer be updated or supported. Use `--include-deprecated` CLI flag to show deprecated datasets.",
192+
"type": [
193+
"boolean",
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"null"
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]
196+
},
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"experimental": {
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"description": "If true, dataset is experimental and excluded with `--no-experimental` CLI flag. Authors mark a dataset as experimental when development is still in progress, or if the dataset is incomplete or of lower quality than usual. Use at own risk.",
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"type": [
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"boolean",
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"null"
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]
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}
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},
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"additionalProperties": true
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},
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"DatasetMeta": {
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"type": "object",
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"properties": {

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