This is the list of pending tasks for eager 3.0.0 pre-release. If you see can think of something more, please comment/add it below. - [ ] Some modules (I noticed some metagenomics ones, but could be others too), are configured twice in `modules.conf`. Remove unnecessary configurations. #1173 - [x] Merge #1169 - [x] Merge #1168 - [ ] Update all modules to use topics (see #1170). - [ ] Plug all MultiQC outputs into the actual MultiQC process. - [ ] Update `README.md`. - [ ] Update `usage.md`: - This is mostly template, but would still need some tweaks to properly describe our pipeline. Below are some I noticed already: - [ ] Update samplesheet input and samplesheet fasta sections with all new params. - [ ] Add table with different samplesheet input columns. - [ ] Update `output.md`: - We need to check that all sections have been documented. We've been pretty good with this at first, but we might have missed some as we go. - [ ] Sections need updating to `data/` and `stats/` subdivisions. - [ ] Update the metro map! - [ ] Nextflow strict syntax #1171
This is the list of pending tasks for eager 3.0.0 pre-release. If you see can think of something more, please comment/add it below.
modules.conf. Remove unnecessary configurations. DSL2: Duplicate module configurations in modules.conf #1173README.md.usage.md:output.md:data/andstats/subdivisions.