change other doublet detection methods to use mix

KurayiChawatama · Copilot · web-flow · commit 6480259e53f2 · 2026-03-13T13:46:08.000+03:00
Co-authored-by: Copilot Autofix powered by AI &lt;175728472+Copilot@users.noreply.github.com&gt;
diff --git a/subworkflows/local/doublet_detection/main.nf b/subworkflows/local/doublet_detection/main.nf
@@ -28,7 +28,7 @@ workflow DOUBLET_DETECTION {
                 ch_h5ad
             )
             ch_predictions = ch_predictions.mix(SCDS.out.predictions)
-            ch_versions = SCDS.out.versions
+            ch_versions = ch_versions.mix(SCDS.out.versions)
         }
 
         if (methods.contains('solo')) {
@@ -38,7 +38,7 @@ workflow DOUBLET_DETECTION {
                 scvi_max_epochs ?: []
             )
             ch_predictions = ch_predictions.mix(SCVITOOLS_SOLO.out.predictions)
-            ch_versions = SCVITOOLS_SOLO.out.versions
+            ch_versions = ch_versions.mix(SCVITOOLS_SOLO.out.versions)
         }
 
         if (methods.contains('scrublet')) {
@@ -47,15 +47,15 @@ workflow DOUBLET_DETECTION {
                 ch_batch_col
             )
             ch_predictions = ch_predictions.mix(SCANPY_SCRUBLET.out.predictions)
-            ch_versions = SCANPY_SCRUBLET.out.versions
+            ch_versions = ch_versions.mix(SCANPY_SCRUBLET.out.versions)
         }
 
         if (methods.contains('doubletdetection')) {
             DOUBLETDETECTION (
                 ch_h5ad
             )
             ch_predictions = ch_predictions.mix(DOUBLETDETECTION.out.predictions)
-            ch_versions = DOUBLETDETECTION.out.versions
+            ch_versions = ch_versions.mix(DOUBLETDETECTION.out.versions)
         }
 
         if (methods.contains('scdblfinder')) {

Original file line number	Diff line number	Diff line change
`@@ -28,7 +28,7 @@ workflow DOUBLET_DETECTION {`
`28`	`28`	`ch_h5ad`
`29`	`29`	`)`
`30`	`30`	`ch_predictions = ch_predictions.mix(SCDS.out.predictions)`
`31`		`- ch_versions = SCDS.out.versions`
	`31`	`+ ch_versions = ch_versions.mix(SCDS.out.versions)`
`32`	`32`	`}`
`33`	`33`
`34`	`34`	`if (methods.contains('solo')) {`
`@@ -38,7 +38,7 @@ workflow DOUBLET_DETECTION {`
`38`	`38`	`scvi_max_epochs ?: []`
`39`	`39`	`)`
`40`	`40`	`ch_predictions = ch_predictions.mix(SCVITOOLS_SOLO.out.predictions)`
`41`		`- ch_versions = SCVITOOLS_SOLO.out.versions`
	`41`	`+ ch_versions = ch_versions.mix(SCVITOOLS_SOLO.out.versions)`
`42`	`42`	`}`
`43`	`43`
`44`	`44`	`if (methods.contains('scrublet')) {`
`@@ -47,15 +47,15 @@ workflow DOUBLET_DETECTION {`
`47`	`47`	`ch_batch_col`
`48`	`48`	`)`
`49`	`49`	`ch_predictions = ch_predictions.mix(SCANPY_SCRUBLET.out.predictions)`
`50`		`- ch_versions = SCANPY_SCRUBLET.out.versions`
	`50`	`+ ch_versions = ch_versions.mix(SCANPY_SCRUBLET.out.versions)`
`51`	`51`	`}`
`52`	`52`
`53`	`53`	`if (methods.contains('doubletdetection')) {`
`54`	`54`	`DOUBLETDETECTION (`
`55`	`55`	`ch_h5ad`
`56`	`56`	`)`
`57`	`57`	`ch_predictions = ch_predictions.mix(DOUBLETDETECTION.out.predictions)`
`58`		`- ch_versions = DOUBLETDETECTION.out.versions`
	`58`	`+ ch_versions = ch_versions.mix(DOUBLETDETECTION.out.versions)`
`59`	`59`	`}`
`60`	`60`
`61`	`61`	`if (methods.contains('scdblfinder')) {`