references_outputs.md

Workflow outputs migration: references

• Generated: 2026-09-25T00:22:35.345692+00:00
• Status: ✅ pass — uses only the new output {} syntax

This report tracks migration from the legacy publishDir directive to the new workflow outputs syntax.

Workflow output {} block

Found 1 top-level output {} block:

• main.nf:391

Legacy publishDir references

No publishDir references found. 🎉