Merge pull request #176 from arokem/hdf5_install

MAINT: Pin h5py separately.

Author: oesteban

.circleci/config.yml

@@ -532,6 +532,10 @@ jobs:
     working_directory: /tmp/src/dmriprep
     steps:
       - checkout
+      - run:
+          name: Install libhdf5
+          command: |
+            sudo apt-get install pkg-config libhdf5-103 libhdf5-dev
       - run:
           name: Start virtual environment
           command: |

.github/workflows/pythonpackage.yml

@@ -14,9 +14,12 @@ jobs:
     strategy:
       matrix:
         python-version: [3.7, 3.8]
-        pip: ["pip~=18.1", "pip>=20.3"]
-        
+        pip: ["pip~=20.3", "pip~=21.0"]
+
     steps:
+    - name: Install hdf5 libraries
+      run: |
+        sudo apt-get install pkg-config libhdf5-103 libhdf5-dev
     - name: Set up Python ${{ matrix.python-version }}
       uses: actions/setup-python@v1
       with:

setup.cfg

@@ -22,6 +22,7 @@ project_urls =
 python_requires = >=3.7
 install_requires =
     dipy >=1.0.0
+    h5py
     indexed_gzip >=0.8.8
     nibabel ~= 3.0
     nipype >= 1.5.1, < 2.0