RPT: Add warnings to report

Author: effigies

fmriprep/viz/config.json

@@ -98,6 +98,16 @@
                 "title": "ROIs in BOLD space",
                 "description": "Brain mask calculated on the BOLD signal (red contour), along with the masks used for a/tCompCor.<br />The aCompCor mask (magenta contour) is a conservative CSF and white-matter mask for extracting physiological and movement confounds. <br />The fCompCor mask (blue contour) contains the top 5% most variable voxels within a heavily-eroded brain-mask."
             },
+            {
+                "name": "epi/warn_tcompcor",
+                "file_pattern": "func/.*_acompcor\\.",
+                "raw": true
+            },
+            {
+                "name": "epi/warn_tcompcor",
+                "file_pattern": "func/.*_tcompcor\\.",
+                "raw": true
+            },
             {
                 "name": "epi_mean_t1_registration/flirt",
                 "file_pattern": "func/.*_flirtnobbr",

fmriprep/workflows/bold/confounds.py

@@ -220,6 +220,16 @@ def init_bold_confs_wf(mem_gb, metadata, name="bold_confs_wf"):
         name='ds_report_bold_rois', run_without_submitting=True,
         mem_gb=DEFAULT_MEMORY_MIN_GB)
 
+    ds_warn_acompcor = pe.Node(
+        DerivativesDataSink(suffix='acompcor'),
+        name='ds_warn_acompcor', run_without_submitting=True,
+        mem_gb=DEFAULT_MEMORY_MIN_GB)
+
+    ds_warn_tcompcor = pe.Node(
+        DerivativesDataSink(suffix='tcompcor'),
+        name='ds_warn_tcompcor', run_without_submitting=True,
+        mem_gb=DEFAULT_MEMORY_MIN_GB)
+
     def _pick_csf(files):
         return files[0]
 
@@ -300,6 +310,8 @@ def _pick_wm(files):
         (acc_msk, mrg_compcor, [('out', 'in2')]),
         (mrg_compcor, rois_plot, [('out', 'in_rois')]),
         (rois_plot, ds_report_bold_rois, [('out_report', 'in_file')]),
+        (acompcor, ds_warn_acompcor, [('out_report', 'in_file')]),
+        (tcompcor, ds_warn_tcompcor, [('out_report', 'in_file')]),
     ])
 
     return workflow