Merge pull request #183 from satra/enh/et

enh: add etelemetry

Author: satra

.circleci/config.yml

@@ -27,7 +27,7 @@ jobs:
             conda create -n $ENV_NAME python=3.6 pip
             source activate $ENV_NAME
             conda install -y cmake mesalib vtk pandas matplotlib \
-                colormath nipype tbb-devel nose
+                colormath nipype tbb-devel nose etelemetry
             conda info --envs
             python setup.py install
             mkdir $vtk_cpp_tools && cd $vtk_cpp_tools && cmake ../ && make

info.py

@@ -51,5 +51,6 @@
 PLATFORMS           = "Linux"
 VERSION             = __version__
 PROVIDES            = ["mindboggle"]
-REQUIRES            = ["nipype", "matplotlib", "colormath", "pandas"]
+REQUIRES            = ["nipype", "matplotlib", "colormath", "pandas",
+                       "etelemetry"]
 

install/Dockerfile

@@ -1,5 +1,5 @@
 # Generated by Neurodocker version 0.4.2-3-gf7055a1
-# Timestamp: 2019-06-11 01:55:15 UTC
+# Timestamp: 2019-09-22 16:31:40 UTC
 # 
 # Thank you for using Neurodocker. If you discover any issues
 # or ways to improve this software, please submit an issue or
@@ -90,6 +90,7 @@ RUN export PATH="/opt/miniconda-latest/bin:$PATH" \
            'nilearn' \
            'tbb-devel' \
            'nose' \
+           'etelemetry' \
     && sync && conda clean -tipsy && sync \
     && bash -c "source activate mb \
     &&   pip install --no-cache-dir  \
@@ -238,7 +239,8 @@ RUN echo '{ \
     \n          "nipype>=1.1.4", \
     \n          "nilearn", \
     \n          "tbb-devel", \
-    \n          "nose" \
+    \n          "nose", \
+    \n          "etelemetry" \
     \n        ], \
     \n        "pip_install": [ \
     \n          "datalad[full]", \

install/neurodocker.sh

@@ -59,7 +59,7 @@ docker run --rm ${image} generate docker \
   --run 'ln -s /usr/lib/x86_64-linux-gnu /usr/lib64' \
   --miniconda \
     conda_install="python=3.6 pip jupyter cmake mesalib vtk=8.2 pandas
-      matplotlib colormath nipype>=1.1.4 nilearn tbb-devel nose" \
+      matplotlib colormath nipype>=1.1.4 nilearn tbb-devel nose etelemetry" \
     pip_install="datalad[full] duecredit" \
     create_env="mb" \
     activate=true \

mindboggle/__init__.py

@@ -17,3 +17,18 @@
 #from . import blah as blah
 # object imports
 #from .blah import blah, blah
+
+import etelemetry
+
+INIT_MSG = "Running {packname} version {version} (latest: {latest})".format
+latest = {"version": 'Unknown'}
+try:
+    from .version import __version__
+    latest = etelemetry.get_project("nipy/mindboggle")
+except Exception as e:
+    print("Could not check for version updates: ", e)
+finally:
+    print(INIT_MSG(packname='mindboggle',
+                   version=__version__,
+                   latest=latest["version"]))
+

mindboggle/mindboggle

@@ -2375,7 +2375,8 @@ if __name__ == '__main__':
     # ------------------------------------------------------------------------
     mbFlow.config['execution']['hash_method'] = 'content'
     mbFlow.config['execution']['crashfile_format'] = 'txt'
-    # mbFlow.config['execution']['use_relative_paths'] = True
+    # Do not propagate the check to sub nodes
+    mbFlow.config['execution']['check_version'] = False
 
     # ------------------------------------------------------------------------
     # Generate a visual graph:

mindboggle/mindboggle123

@@ -452,9 +452,10 @@ if __name__ == '__main__':
     # Workflow configuration: content hashing, crashfiles, etc.:
     # --------------------------------------------------------------------
     mbFlow.config['execution']['hash_method'] = 'content'
-    # mbFlow.config['execution']['use_relative_paths'] = True
     mbFlow.config['execution']['crashfile_format'] = 'txt'
     mbFlow.config['execution']['crashdump_dir'] = WORK
+    # Do not propagate the version check to sub nodes
+    mbFlow.config['execution']['check_version'] = False
 
     # --------------------------------------------------------------------
     # Debug: http://nipy.org/nipype/users/config_file.html#debug-configuration