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Merge pull request #2589 from nipy/rel/1.0.4
REL: 1.0.4
2 parents a882e74 + 868a903 commit c8091cc

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‎.circleci/config.yml

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python setup.py sdist bdist_wheel
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twine upload dist/*
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update_feedstock:
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machine: *machine_kwds
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working_directory: /home/circleci/nipype
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steps:
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- checkout:
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path: /home/circleci/nipype
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- run:
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name: Install hub
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command: |
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curl -sSL https://github.com/github/hub/releases/download/v2.2.9/hub-linux-amd64-2.2.9.tgz | \
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tar zxv -C /tmp
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sudo /tmp/hub-linux-amd64-2.2.9/install
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- run:
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name: Expand SSH Key
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command: |
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(echo "-----BEGIN OPENSSH PRIVATE KEY-----";
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echo $GITHUB_ED25519 | fold -w 71;
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echo "-----END OPENSSH PRIVATE KEY-----") > ~/.ssh/id_ed25519
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chmod go-rwx ~/.ssh/id_ed25519
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ssh-keygen -y -f ~/.ssh/id_ed25519 > ~/.ssh/id_ed25519.pub
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- run:
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name: Set git identity
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command: |
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git config --global user.name "nipybot"
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git config --global user.email "[email protected]"
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- run:
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name: Update feedstock
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command: |
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ssh-add -D
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ssh-add ~/.ssh/id_ed25519
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/home/circleci/nipype/tools/feedstock.sh
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workflows:
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version: 2
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build_test_deploy:
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- test_fmri_spm_nested_fsl_feeds
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- test_py3_fmri_fsl_spm
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- test_py3_fmri_spm_dartel_multiproc
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- update_feedstock:
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context: nipybot
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filters:
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branches:
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only: /rel\/.*/
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tags:
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only: /.*/

‎.gitignore

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.*.swp
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.ipynb_checkpoints/
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.ruby-version
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.pytest_cache

‎.zenodo.json

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"name": "Esteban, Oscar",
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"orcid": "0000-0001-8435-6191"
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},
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{
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"affiliation": "Independent",
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"name": "Ziegler, Erik",
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"orcid": "0000-0003-1857-8129"
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},
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{
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"affiliation": "Stanford University",
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"name": "Markiewicz, Christopher J.",
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"orcid": "0000-0002-6533-164X"
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},
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{
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"affiliation": "Independent",
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"name": "Ziegler, Erik",
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"orcid": "0000-0003-1857-8129"
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},
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{
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"affiliation": "The University of Iowa",
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"name": "Ellis, David Gage",
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"name": "Jordan, Kesshi",
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"orcid": "0000-0001-6313-0580"
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},
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{
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"affiliation": "Department of Psychology, Stanford University",
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"name": "Waskom, Michael"
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},
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{
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"affiliation": "MIT",
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"name": "Goncalves, Mathias",
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"orcid": "0000-0002-7252-7771"
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},
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{
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"affiliation": "Department of Psychology, Stanford University",
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"name": "Waskom, Michael"
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},
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{
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"affiliation": "Developer",
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"name": "Clark, Daniel",
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{
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"name": "Madison, Cindee"
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},
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{
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"affiliation": "Dartmouth College",
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"name": "Visconti di Oleggio Castello, Matteo",
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"orcid": "0000-0001-7931-5272"
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},
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{
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"affiliation": "National Institutes of Health",
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"name": "Clark, Michael G. "
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"name": "Keshavan, Anisha",
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"orcid": "0000-0003-3554-043X"
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},
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{
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"affiliation": "Dartmouth College",
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"name": "Visconti di Oleggio Castello, Matteo",
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"orcid": "0000-0001-7931-5272"
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},
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{
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"name": "Pinsard, Basile"
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},
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"name": "Nielson, Dylan M.",
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"orcid": "0000-0003-4613-6643"
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},
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{
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"affiliation": "Molecular Imaging Research Center, CEA, France",
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"name": "Bougacha, Salma"
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},
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{
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"affiliation": "INRIA",
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"name": "Varoquaux, Gael",
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{
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"name": "Moloney, Brendan"
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},
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{
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"affiliation": "Molecular Imaging Research Center, CEA, France",
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"name": "Bougacha, Salma"
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},
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{
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"affiliation": "Dartmouth College: Hanover, NH, United States",
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"name": "Halchenko, Yaroslav O.",
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"name": "Pauli, Wolfgang M.",
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"orcid": "0000-0002-0966-0254"
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},
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{
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"affiliation": "University College London",
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"name": "Mancini, Matteo",
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"orcid": "0000-0001-7194-4568"
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},
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{
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"affiliation": "Duke University",
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"name": "Iqbal, Shariq",
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"affiliation": "Nathan s Kline institute for psychiatric research",
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"name": "Sikka, Sharad"
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},
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{
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"affiliation": "University College London",
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"name": "Mancini, Matteo",
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"orcid": "0000-0001-7194-4568"
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},
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{
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"name": "Schwartz, Yannick"
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},
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{
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"name": "Hallquist, Michael"
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},
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{
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"affiliation": "Donders Institute for Brain, Cognition and Behavior, Center for Cognitive Neuroimaging",
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"name": "Chetverikov, Andrey",
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"orcid": "0000-0003-2767-6310"
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},
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{
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"name": "Salvatore, John"
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},
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"name": "Craddock, R. Cameron",
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"orcid": "0000-0002-4950-1303"
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},
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{
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"affiliation": "Donders Institute for Brain, Cognition and Behavior, Center for Cognitive Neuroimaging",
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"name": "Chetverikov, Andrey",
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"orcid": "0000-0003-2767-6310"
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},
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{
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"name": "Inati, Souheil"
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},
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],
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"license": "Apache-2.0",
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"upload_type": "software"
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}
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}

‎doc/changelog/1.X.X-changelog

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1.0.4 (May 29, 2018)
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====================
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###### [Full changelog](https://github.com/nipy/nipype/milestone/20?closed=1)
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* FIX: Update logging levels in enable_debug_mode (https://github.com/nipy/nipype/pull/2595)
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* FIX: Set default result in DistributedPluginBase._clean_queue (https://github.com/nipy/nipype/pull/2596)
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* FIX: Correctly connect JoinNodes in nested iterables (https://github.com/nipy/nipype/pull/2597)
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* FIX: DTITK nonlinear workflow origin reslicing (https://github.com/nipy/nipype/pull/2561)
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* FIX: ResponseSD support for multiple b-vals (https://github.com/nipy/nipype/pull/2582)
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* FIX: Workaround to ICA-AROMA change of directory (https://github.com/nipy/nipype/pull/2566)
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* FIX/TEST: Gunzip cleanup and test (https://github.com/nipy/nipype/pull/2564)
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* FIX: Print UID in crashfile if login name is unavailable (https://github.com/nipy/nipype/pull/2563)
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* ENH: initial connectome workbench support (https://github.com/nipy/nipype/pull/2594)
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* ENH: AFNI (3d)LocalBistat interface (https://github.com/nipy/nipype/pull/2590)
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* ENH: Reorient interface (https://github.com/nipy/nipype/pull/2572)
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* ENH: FSL slice interface (https://github.com/nipy/nipype/pull/2585)
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* ENH: LabelGeometryMeasures interface (https://github.com/nipy/nipype/pull/2586)
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* ENH: MRTrix3 dwidenoise interface (https://github.com/nipy/nipype/pull/2568)
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* ENH: ReportCapableInterface mix-in/base interface (https://github.com/nipy/nipype/pull/2560)
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* CI: Move PyPI deployment to Circle (https://github.com/nipy/nipype/pull/2587)
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* CI: Submit Travis results to codecov (https://github.com/nipy/nipype/pull/2574)
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1.0.3 (April 30, 2018)
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======================
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‎doc/conf.py

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# The short X.Y version.
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version = nipype.__version__
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# The full version, including alpha/beta/rc tags.
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release = "1.0.3"
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release = "1.0.4"
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# The language for content autogenerated by Sphinx. Refer to documentation
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# for a list of supported languages.

‎doc/documentation.rst

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:Release: |version|
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:Date: |today|
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Previous versions: `0.14.0 <http://nipype.readthedocs.io/en/v0.14.0/>`_ `0.13.1 <http://nipype.readthedocs.io/en/0.13.1/>`_
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Previous versions: `1.0.3 <http://nipype.readthedocs.io/en/1.0.3/>`_ `1.0.2 <http://nipype.readthedocs.io/en/1.0.2/>`_
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.. container:: doc2

‎nipype/info.py

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# full release. '.dev' as a version_extra string means this is a development
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# version
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# Remove -dev for release
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__version__ = '1.0.4-dev'
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__version__ = '1.0.4'
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def get_nipype_gitversion():

‎nipype/interfaces/image.py

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[ 0. 0. 1. 0.]
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[ 0. 0. 0. 1.]]
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.. testcleanup::
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>>> import os
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>>> os.unlink(res.outputs.out_file)
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>>> os.unlink(res.outputs.transform)
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"""
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input_spec = ReorientInputSpec
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output_spec = ReorientOutputSpec

‎nipype/interfaces/mixins/tests/__init__.py

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# -*- coding: utf-8 -*-

‎nipype/interfaces/mixins/tests/test_auto_ReportCapableInterface.py

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# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
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from __future__ import unicode_literals
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from ..reporting import ReportCapableInterface
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def test_ReportCapableInterface_inputs():
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input_map = dict(
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ignore_exception=dict(
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deprecated='1.0.0',
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nohash=True,
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usedefault=True,
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), )
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inputs = ReportCapableInterface.input_spec()
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for key, metadata in list(input_map.items()):
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for metakey, value in list(metadata.items()):
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assert getattr(inputs.traits()[key], metakey) == value

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