Bimodal analysis

[emjblake]

What does BPI in the test_bimodal function stand for?

wgbstools test_bimodal -r $region Left_Ventricle_STL001.IGF2.pat.gz
LL: -1401.2486342579095 | 281 reads | 1437 observed | BPI: 0.5087178153029501
LL: -457.82607811961105 | 281 reads | 1437 observed | BPI: 0.8018590355733447
pvalue: 0.000e+00

[yonniejon]

Indeed. It's the average likelihood (geometric mean) per observation (CpG site). We will have to find a better name....

[emjblake]

@yonniejon, to confirm, the output is single model (first line) vs two model (second line), where pvalue threshold <=0.05 means bimodal distribution? Thanks!

[yonniejon]

Yes, you are correct