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Brian Jones
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update doc. Removed debugging autoreload string
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8 files changed

+42
-21
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8 files changed

+42
-21
lines changed

‎py_notebooks/bubble_plot.ipynb‎

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@@ -10,7 +10,11 @@
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"\n",
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"<span style=\"color:red\">Warning:</span> \n",
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"\n",
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"Input files, by default, must include **station** , **catalogNumber**, **unqDetecID**, **decimalLatitude**, **decimalLongitude**, and **dateCollectedUTC** as columns. To change the column names allowed, pass the following variables to the bubble_plot function: **col_catalognumber**, **col_station**, **col_latitude**, **col_longitude**, **col_datecollected**, **col_unique_id**\n"
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"Input files must include `station` , `catalognumber`, `unqdetecid`, `latitude`, `longitude`, and `datecollected` as columns.\n",
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"\n",
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"OR\n",
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"\n",
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"`station` , `catalogNumber`, `unqDetecID`, `decimalLatitude`, `decimalLongitude`, and `dateCollectedUTC` columns.\n"
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]
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},
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{

‎py_notebooks/cohort_data.ipynb‎

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"\n",
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"<span style=\"color:red\">Warning:</span> \n",
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"\n",
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"Input files, by default, must include **station** , **catalogNumber**, **unqDetecID**, **decimalLatitude**, **decimalLongitude**, and **dateCollectedUTC** as columns. To change the column names allowed, pass the following variables to the compress_detections and cohort functions: **col_catalognumber**, **col_station**, **col_latitude**, **col_longitude**, **col_datecollected**, **col_unique_id**"
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"Input files must include `station` , `catalognumber`, `unqdetecid`, `latitude`, `longitude`, and `datecollected` as columns.\n",
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"\n",
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"OR\n",
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"\n",
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"`station` , `catalogNumber`, `unqDetecID`, `decimalLatitude`, `decimalLongitude`, and `dateCollectedUTC` columns."
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]
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},
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{

‎py_notebooks/detection_compression.ipynb‎

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"\n",
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"<span style=\"color:red\">Warning:</span> \n",
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"\n",
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"Input files, by default, must include **station** , **catalogNumber**, **unqDetecID**, **decimalLatitude**, **decimalLongitude**, and **dateCollectedUTC** as columns. To change the column names allowed, pass the following variables to the compress_detections function: **col_catalognumber**, **col_station**, **col_latitude**, **col_longitude**, **col_datecollected**, **col_unique_id**"
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"Input files must include `station` , `catalognumber`, `unqdetecid`, `latitude`, `longitude`, and `datecollected` as columns.\n",
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"\n",
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"OR\n",
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"\n",
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"`station` , `catalogNumber`, `unqDetecID`, `decimalLatitude`, `decimalLongitude`, and `dateCollectedUTC` columns."
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]
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},
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{

‎py_notebooks/filters.ipynb‎

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"\n",
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"<span style=\"color:red\">Warning:</span> \n",
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"\n",
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" Input files must include ``datecollected``, ``catalognumber``, ``station`` and ``unqdetecid`` as columns."
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"%load_ext autoreload\n",
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"%autoreload 2"
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"Input files must include `datecollected`, `catalognumber`, `station` and `unqdetecid` as columns.\n",
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"\n",
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"OR\n",
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"\n",
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"`dateCollectedUTC`, `catalogNumber`, `station` and `unqDetecID` columns."
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]
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},
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{

‎py_notebooks/interval_data.ipynb‎

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"\n",
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"<span style=\"color:red\">Warning:</span> \n",
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"\n",
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" Input files must include ``datecollected``, ``catalognumber``, and ``unqdetecid`` as columns."
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"Input files must include `datecollected`, `catalognumber`, and `unqdetecid` as columns.\n",
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"\n",
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"OR\n",
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"\n",
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"`dateCollectedUTC`, `catalogNumber`, and `unqDetecID`"
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]
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},
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{

‎py_notebooks/receiver_efficiency_index.ipynb‎

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"\n",
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"<span style=\"color:red\">Warning:</span>\n",
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"\n",
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" Detection input files must include ``datecollected``, ``fieldnumber``, ``station``, and ``scientificname`` as columns and deployment input files must include ``station_name``, ``deploy_date``, ``last_download``, and ``recovery_date`` as columns.\n",
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"Deployment input files must include `station_name`, `deploy_date`, `last_download`, and `recovery_date` as columns.\n",
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"\n",
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"Detection input files must include `datecollected`, `fieldnumber`, `station`, and `scientificname` as columns and \n",
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"\n",
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"OR\n",
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"\n",
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"`dateCollected`, `tagName`, `station`, `scientificname` columns.\n",
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" \n",
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"``REI()`` takes two arguments. The first is a dataframe of detections the detection timstamp, the station identifier, the species, and the tag identifier. The next is a dataframe of deployments for each station. The station name should match the stations in the detections. The deployments need to include a deployment date and recovery date or last download date. Details on the columns metnioned see the preparing data section.\n",
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"\n",

‎py_notebooks/residence_index.ipynb‎

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"source": [
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"<span style=\"color:red\">Warning:</span> \n",
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"\n",
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" Input files must include ``datecollected``, ``station``, ``longitude``, \n",
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" ``latitude``, ``catalognumber``, and ``unqdetecid`` as columns."
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"Input files must include `datecollected`, `station`, `longitude`, `latitude`, `catalognumber`, and `unqdetecid` as columns.\n",
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"\n",
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"OR \n",
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"\n",
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"`dateCollected`, `station`, `decimalLongitude`, `decimalLatitude`, `catalogNumber`, and `unqDetecID` columns."
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]
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},
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{

‎py_notebooks/visual_detection_timeline.ipynb‎

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"\n",
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"<span style=\"color:red\">Warning:</span> \n",
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"\n",
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" Input files must include ``datecollected``, ``catalognumber``, ``station``, ``latitude``, and ``longitude`` (Old format) as columns\n",
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" OR \n",
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" ``dateCollected``, ``catalogNumber``, ``station``, ``decimalLatitude``, and ``decimalLongitude`` (New format)\n"
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"Input files must include `datecollected`, `catalognumber`, `station`, `latitude`, and `longitude` (Old format) as columns\n",
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"\n",
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"OR \n",
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"\n",
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"`dateCollected`, `catalogNumber`, `station`, `decimalLatitude`, and `decimalLongitude` (New format) column.\n"
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]
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},
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{

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