ontoweaver/pyproject.toml at main · oncodash/ontoweaver · GitHub

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[project]
name = "ontoweaver"
version = "1.5.4"
description = "Convert iterable data to Semantic Knowledge Graphs, with a simple declarative mapping."
readme = "README.md"
authors = [
    { name = "Johann Dreo", email = "johann.dreo@pasteur.fr" },
    { name = "Marko Baric", email = "marko.baric@pasteur.fr" },
    { name = "Claire Laudy", email = "claire.laudy@thalesgroup.com" },
    { name = "Matthieu Najm", email = "matthieu.najm@pasteur.fr" },
    { name = "Benno Schwikowski", email = "benno.schwikowski@pasteur.fr" },
]
requires-python = "<4.0,>=3.11"
dependencies = [
    "biocypher<1.0.0,>=0.11.0",
    "pooch<2.0.0,>=1.7.0",
    "pandas<3.0.0,>=2.3.1",
    "numpy<3.0.0,>=2.2.4",
    "owlready2<1.0,>=0.49",
    "jsonargparse<5.0,>=4.39",
    "xdg-base-dirs<7.0.0,>=6.0.2",
    "pandera[io]<1.0.0,>=0.27.0",
    "alive-progress>=3.2,<4.0",
    "fsspec<2026.0.0,>=2025.10.0",
    "natsort>5.0.0",
    "lxml>6.0.0",
    "jmespath>=1.0.1",
    "pyaml>=25.7.0",
    "fastparquet>=2025.12.0",
    "csvkit>=2.2.0",
]

[dependency-groups]
dev = [
    "pyaml>=25.7.0",
    "pytest",
    "sphinx-rtd-theme<4.0.0,>=3.0.2",
    "pygments-csv-lexer",
    "graphviz",
    "dot",
]

[project.scripts]
ontoweave = "ontoweaver.ontoweave:main"

[tool.pytest.ini_options]
addopts = [
    "--import-mode=importlib",
]
pythonpath = ["src"]
testpaths = [
    "tests",
]

[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"

[tool.setuptools.packages.find]
where = ["src"]
include = ["ontoweaver*"]