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    27 repositories

    • BioTerm-Bench

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 14, 2026Aug 14, 2026

    • KPDwESM3

      Public
      Knotted Protein Design with ESM3
      Python
      •1•1•0•0•Updated Aug 11, 2026Aug 11, 2026

    • llm_and_compression

      Public
      HTML
      •
      Apache License 2.0
      •0•1•0•0•Updated Jul 4, 2026Jul 4, 2026

    • bioinfo-school

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •17•6•0•0•Updated Jun 30, 2026Jun 30, 2026

    • CAoPSPT

      Public
      materials and data related to the bachelor thesis "Comparative Analysis of Protein Structure Prediction Tools"
      Jupyter Notebook
      •
      Apache License 2.0
      •0•2•0•0•Updated Dec 15, 2025Dec 15, 2025

    • genomic_benchmarks

      Public
      Benchmarks for classification of genomic sequences
      deep-learninggenomicstensorflow
      deep-learninggenomicstensorflowpytorchdatasetgenomics-data
      Jupyter Notebook
      •
      Apache License 2.0
      •24•182•9•0•Updated Aug 14, 2025Aug 14, 2025

    • miRNA

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jun 11, 2025Jun 11, 2025

    • gordic_knot

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 24, 2025Mar 24, 2025

    • pknots_experiments

      Public
      Models recognizing knotted x unknotted proteins from their sequence
      Jupyter Notebook
      •
      Apache License 2.0
      •0•5•0•0•Updated Mar 19, 2025Mar 19, 2025

    • ArtificialKnottedProteinsPaper

      Public
      materials and data related to "Unveiling the Entangled Landscape of Artificial Knotted Proteins" paper
      Jupyter Notebook
      •
      Apache License 2.0
      •1•0•0•0•Updated Mar 19, 2025Mar 19, 2025

    • rbp_encode_eclip

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •4•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • HybriDetector

      Public
      R
      •
      Apache License 2.0
      •3•3•1•0•Updated Sep 3, 2024Sep 3, 2024

    • miRBind

      Public
      Jupyter Notebook
      •0•2•1•0•Updated Sep 3, 2024Sep 3, 2024

    • T3SE

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated May 31, 2023May 31, 2023

    • penguinn

      Public
      GitHub mirror of GitLab penguinn repo
      Python
      •2•5•0•2•Updated Feb 3, 2023Feb 3, 2023

    • DNA-pretraining

      Public
      Jupyter Notebook
      •0•7•0•0•Updated Dec 23, 2022Dec 23, 2022

    • rbp

      Public
      Python package providing tools for RNA Bioinformatics
      Jupyter Notebook
      •
      MIT License
      •2•2•8•6•Updated Dec 8, 2022Dec 8, 2022

    • PENGUINN-RNA

      Public
      ML method that predicts probability of forming RNA G4s
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 21, 2022Oct 21, 2022

    • ECCB2022

      Public
      Deep Learning For Biological Sequence Data: From Convolutional Neural Networks To Transformers, our tutorial into DL presented at 21st European Conference on Co…
      Jupyter Notebook
      •
      Apache License 2.0
      •0•10•0•0•Updated Sep 20, 2022Sep 20, 2022

    • ENNGene

      Public
      ENNGene: an Easy Neural Network model building tool for Genomics
      Python
      •
      GNU Affero General Public License v3.0
      •2•11•0•0•Updated Mar 31, 2022Mar 31, 2022

    • mirna_binding

      Public
      microRNA binding project repository
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Mar 1, 2022Mar 1, 2022

    • paper_FineTuning_Transformers_For_Genomic_Tasks

      Public
      code to reproduce results from Fine-Tuning Transformers For Genomic Tasks paper
      Jupyter Notebook
      •
      Apache License 2.0
      •1•1•0•0•Updated Feb 5, 2022Feb 5, 2022

    • genome_browser

      Public
      Python
      •
      Apache License 2.0
      •0•0•1•0•Updated Sep 26, 2021Sep 26, 2021

    • ECCB2021

      Public
      ECCB2021 tutorial: Inside the ‘Black Box’: Explainable Deep Learning Models For Image and Sequence Classification
      Jupyter Notebook
      •
      Apache License 2.0
      •6•11•0•0•Updated Sep 3, 2021Sep 3, 2021

    • ECCB2020

      Public
      ECCB2020 tutorial: Using Deep Learning For Image and Sequence Analysis
      Jupyter Notebook
      •
      Apache License 2.0
      •4•9•0•0•Updated Sep 1, 2020Sep 1, 2020

    • IoML

      Public
      Interpretation of Machine Learning for Genomic sequences / Master thesis project for Jakub Polacek
      Jupyter Notebook
      •0•0•0•0•Updated Apr 15, 2020Apr 15, 2020

    • tidyverse-workshop-20200302

      Public
      Materials for the R/Tidyverse workshop at CEITEC
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Mar 3, 2020Mar 3, 2020
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