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    76 repositories

    • geppetto-meta

      Public
      JavaScript
      •
      Other
      •4•6•96•27•Updated Sep 7, 2026Sep 7, 2026

    • cloud-harness

      Public
      Python
      •
      Other
      •5•19•65•11•Updated Sep 5, 2026Sep 5, 2026

    • neuroglancer

      Public
      WebGL-based viewer for volumetric data
      TypeScript
      •
      Apache License 2.0
      •381•1•0•5•Updated Sep 4, 2026Sep 4, 2026

    • interlex

      Public
      JavaScript
      •
      MIT License
      •4•3•17•6•Updated Sep 3, 2026Sep 3, 2026

    • ami

      Public
      AMI Medical Imaging (AMI) JS ToolKit
      JavaScript
      •
      MIT License
      •212•0•0•0•Updated Sep 2, 2026Sep 2, 2026

    • scicrunch-antibody-registry

      Public
      A repo for the SciCrunch antibody registry portal
      Python
      •
      Apache License 2.0
      •2•1•0•3•Updated Aug 28, 2026Aug 28, 2026

    • CATMAID

      Public
      Collaborative Annotation Toolkit for Massive Amounts of Image Data
      JavaScript
      •
      GNU General Public License v3.0
      •60•0•0•3•Updated Aug 26, 2026Aug 26, 2026

    • dandi-hub

      Public
      Infrastructure and code for the dandihub / MetaCell fork
      Jinja
      •
      Other
      •25•1•6•1•Updated Aug 14, 2026Aug 14, 2026

    • virtual-fly-brain

      Public
      JavaScript
      •1•2•5•1•Updated Aug 5, 2026Aug 5, 2026

    • dknet

      Public
      TypeScript
      •0•0•0•0•Updated Jul 15, 2026Jul 15, 2026

    • idp-arc

      Public
      TypeScript
      •0•0•0•0•Updated Jun 30, 2026Jun 30, 2026

    • sckan-composer

      Public
      TypeScript
      •1•1•50•3•Updated Jun 20, 2026Jun 20, 2026

    • sckan-explorer

      Public
      A repo fo SCKAN Explorer
      TypeScript
      •1•1•0•0•Updated Apr 1, 2026Apr 1, 2026

    • NetPyNE-UI

      Public
      NetPyNE User interface
      JavaScript
      •10•23•62•17•Updated Mar 25, 2026Mar 25, 2026

    • neuroglancer-deployment

      Public
      Repo to host deployment configuration for Neuroglancer
      Dockerfile
      •0•1•0•0•Updated Mar 23, 2026Mar 23, 2026

    • fitzpatrick-lab-mpfi-collaboration

      Public
      Python
      •0•0•0•0•Updated Jan 18, 2026Jan 18, 2026

    • HNN-UI

      Public
      HNN User Interface
      Python
      •2•2•3•1•Updated Jan 6, 2026Jan 6, 2026

    • ramirez-suny-metacell-collaboration

      Public
      0•0•0•0•Updated Dec 22, 2025Dec 22, 2025

    • cryoet-data-portal-backend

      Public
      CryoET Data Portal API server & ingestion scripts
      Python
      •
      MIT License
      •6•0•0•1•Updated Dec 11, 2025Dec 11, 2025

    • cryoet-data-portal

      Public
      CryoET Data Portal
      TypeScript
      •
      MIT License
      •12•0•0•0•Updated Dec 8, 2025Dec 8, 2025

    • sds-viewer

      Public
      SDS Viewer
      JavaScript
      •
      MIT License
      •5•4•28•1•Updated Nov 7, 2025Nov 7, 2025

    • ai-model-for-connectomics

      Public
      AI Model for Connectomics
      Jupyter Notebook
      •0•0•0•0•Updated Oct 20, 2025Oct 20, 2025

    • salk-interactive-atlas

      Public
      TypeScript
      •1•2•149•6•Updated Oct 6, 2025Oct 6, 2025

    • c-elegans-app

      Public
      0•1•0•0•Updated Sep 3, 2025Sep 3, 2025

    • nwb-explorer

      Public
      NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files
      JavaScript
      •
      Other
      •16•27•32•3•Updated Aug 28, 2025Aug 28, 2025

    • Zeiss-Data-Science

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

    • igneous

      Public
      Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
      Python
      •
      GNU General Public License v3.0
      •24•0•0•0•Updated Jun 17, 2025Jun 17, 2025

    • mpfi-wang-lab-collaboration

      Public
      HTML
      •
      MIT License
      •0•1•0•0•Updated Jun 9, 2025Jun 9, 2025

    • cyroet-neuroglancer

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated May 15, 2025May 15, 2025

    • napari-mapzebrain-segmentation

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Apr 25, 2025Apr 25, 2025
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