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@bio-datascience Biomedical Statistics and Data Science @ LMU/HMGU Munich

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    64 repositories

    • capellini-workflow

      Public
      Python
      •0•0•0•0•Updated Aug 19, 2026Aug 19, 2026

    • progenomes-harmonizer

      Public
      Python
      •0•0•0•0•Updated Aug 19, 2026Aug 19, 2026

    • procs-maker

      Public
      Python
      •0•0•0•0•Updated Aug 19, 2026Aug 19, 2026

    • q2-gglasso

      Public
      QIIME 2 plugin which contains algorithms for solving General Graphical Lasso (GGLasso) problems
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•0•Updated Aug 13, 2026Aug 13, 2026

    • q2-classo-latest

      Public
      Constrained sparse regression and classification
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•0•Updated Aug 13, 2026Aug 13, 2026

    • crispri-dgrowthr

      Public
      Workflow for analyzing CRISPRi perturbation screens using DGrowthR
      0•0•0•0•Updated Aug 11, 2026Aug 11, 2026

    • ahbd

      Public
      Analysis of high-dimensional biological data
      HTML
      •0•0•0•0•Updated Jul 24, 2026Jul 24, 2026

    • opt4bio

      Public
      GitHub repository for the Helmholtz AI project Opt4Bio
      0•0•0•0•Updated Jul 1, 2026Jul 1, 2026

    • VirNest_data

      Public
      Hierarchical virus clustering for metagenomic data — VirNest & VirNestMG
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 22, 2026Jun 22, 2026

    • biscot

      Public
      Biscot package
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated May 17, 2026May 17, 2026

    • cosmoDA

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Mar 9, 2026Mar 9, 2026

    • comp-iv

      Public
      Collection of methods for instrumental variable settings with a compositional cause.
      Jupyter Notebook
      •1•0•0•0•Updated Mar 9, 2026Mar 9, 2026

    • DGrowthR

      Public
      This repository contains the code for the DGrowthR package, as well as the workflow for the analysis of public datasets
      HTML
      •
      Other
      •0•7•1•0•Updated Mar 2, 2026Mar 2, 2026

    • ige-gut-microbiome-analysis

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Feb 11, 2026Feb 11, 2026

    • q2-hdstats-docs

      Public
      Example of using q2-gglasso and q2-classo with Atacama soil microbiome
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Jan 15, 2026Jan 15, 2026

    • GitHub_repositories_Roberto

      Public
      Here's an overview of the repos I worked on during my PhD in the group :D
      0•0•0•0•Updated Dec 15, 2025Dec 15, 2025

    • MolE

      Public
      Jupyter Notebook
      •
      MIT License
      •6•0•0•0•Updated Dec 15, 2025Dec 15, 2025

    • mole_antimicrobial_potential

      Public
      Using MolE pre-trained representation to predict novel antimicrobial compounds
      Jupyter Notebook
      •
      MIT License
      •6•0•0•0•Updated Dec 15, 2025Dec 15, 2025

    • bio-datascience.github.io

      Public
      This is the repository for our group's webpage
      HTML
      •
      Other
      •4•1•0•0•Updated Dec 14, 2025Dec 14, 2025

    • plot_templates

      Public
      Some templates for commonly used plots in bio-datascience
      Jupyter Notebook
      •1•0•0•0•Updated Jul 14, 2025Jul 14, 2025

    • EcologicalTimeSeries

      Public
      This Repository summarizes time series datasets and three methods to estimate higher-order species interactions from ecological time series
      Jupyter Notebook
      •
      Other
      •2•0•0•0•Updated Jun 5, 2025Jun 5, 2025

    • ecoli_regulator_screen_binsfeld25

      Public
      The goal this repository is to model CPI scores from Binsfeld et al., 2025
      Other
      •1•0•0•0•Updated May 29, 2025May 29, 2025

    • Microbial-Interactions

      Public
      R
      •
      MIT License
      •1•0•0•0•Updated May 26, 2025May 26, 2025

    • BacSC

      Public
      Optimized processing of bacterial single-cell data
      Jupyter Notebook
      •
      MIT License
      •0•3•1•0•Updated Apr 17, 2025Apr 17, 2025

    • GitHub_repositories_Mara

      Public
      This is an overview of my GitHub repos :)
      1•0•0•0•Updated Mar 12, 2025Mar 12, 2025

    • GraphReg

      Public
      GraphReg: An Extended Stability Approach to Regularization Selection in Sparse Graphical Models
      GNU General Public License v3.0
      •1•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • Drug-interactions-HCS

      Public
      R
      •
      MIT License
      •1•0•0•0•Updated Apr 27, 2024Apr 27, 2024

    • ProDG

      Public
      Python
      •
      MIT License
      •1•1•0•0•Updated Mar 5, 2024Mar 5, 2024

    • MetaIBS

      Public
      Meta-analysis of microbiome composition measured by 16S rRNA seq in IBS case-control studies
      Jupyter Notebook
      •2•3•0•0•Updated Jan 24, 2024Jan 24, 2024

    • asteRIa

      Public
      R
      •1•0•0•0•Updated Jan 15, 2024Jan 15, 2024
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