devgru/DESCRIPTION at master · pblaney/devgru · GitHub

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Package: devgru
Title: Developmental environment for GenomicRanges utilities
Version: 0.99.0
Date: 2025-04-11
Authors@R:
    person("Patrick", "Blaney", email = "patrick.blaney@nyulangone.org", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-9319-8866"))
Description: A packaged-up environment in R specifically for various utilities that are built on GenomicRanges framework.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
URL: https://github.com/pblaney/devgru
BugReports: https://github.com/pblaney/devgru/issues
biocViews: Software, BiomedicalInformatics
Depends:
    R (>= 4.1.0),
    GenomicRanges,
    GenomeInfoDb,
    data.table,
    gUtils,
    dplyr
Imports:
    BSgenome.Hsapiens.UCSC.hg38,
    fs,
    cli,
    crayon,
    pio,
    pak,
    librarian,
    hms,
    readr,
    stringr,
    purrr,
    reshape2,
    utils,
    stats,
    R.utils,
    parallel,
    doParallel,
    easypar,
    rtracklayer,
    VariantAnnotation,
    S4Vectors,
    Biostrings,
    gtools,
    ggplot2,
    fishHook,
    pillar
Suggests:
    scales,
    paletteer,
    patchwork,
    ggpubr,
    ggridges,
    ggfittext,
    DNAcopy,
    rpart,
    gGnome,
    DESeq2,
    ggpie,
    tibble,
    ggrepel,
    SummarizedExperiment,
    fgsea,
    tidyr,
    BiocParallel
Remotes:
    github::mskilab-org/gUtils,
    github::caravagnalab/easypar,
    github::mskilab-org/fishHook