NAMESPACE

# Generated by roxygen2: do not edit by hand

export(aggregate_these)
export(chrompar)
export(cli_pio_colorscheme)
export(cli_stopwatch_end)
export(cli_stopwatch_start)
export(copynumber_palettier)
export(dt_sanitycheck)
export(dt_to_gr)
export(function_cli_intro)
export(geom_deseq2_volcano)
export(geom_gap_imputation)
export(geom_gsea_enrichment)
export(geom_jabba_stats)
export(get_cbs_per_chromosome)
export(get_corrected_cnv_profile)
export(get_cov_gap_imputation)
export(get_deseq2_diff_expr)
export(get_fgsea_pathway_enrichment)
export(get_fragcounter_segmentation)
export(get_genes_shortcut)
export(get_imputed_gaps_per_chromosome)
export(get_jabba_qc_diagnostic)
export(get_maf_lite)
export(get_qc_diagnostics_alignment)
export(get_qc_diagnostics_snvindel)
export(get_vaf)
export(gr_flank)
export(gr_refactor_seqs)
export(gr_sanitycheck)
export(gr_to_seg)
export(kit_loadout)
export(read_bed_file)
export(read_gtf_file)
export(read_maf_file)
export(read_vcf_file)
import(GenomeInfoDb)
import(GenomicRanges)
import(R.utils)
import(VariantAnnotation)
import(cli)
import(crayon)
import(data.table)
import(dplyr)
import(fishHook)
import(gUtils)
import(ggplot2)
import(pio)
import(stats)
import(stringr)
import(utils)
importFrom(BSgenome.Hsapiens.UCSC.hg38,Hsapiens)
importFrom(Biostrings,toString)
importFrom(S4Vectors,mcols)
importFrom(doParallel,registerDoParallel)
importFrom(easypar,run)
importFrom(fs,path_package)
importFrom(grDevices,colorRampPalette)
importFrom(gtools,mixedsort)
importFrom(hms,hms)
importFrom(librarian,shelf)
importFrom(pak,pkg_install)
importFrom(pillar,glimpse)
importFrom(purrr,as_vector)
importFrom(readr,read_delim)
importFrom(reshape2,melt)
importFrom(rtracklayer,import)
importFrom(utils,packageVersion)