Zip files cannot be used as inputs to "gather" when using the assembled c3po-cmd jar due to the assembly not merging META-INF/services, see: http://blog.xebia.com/2011/07/20/jar-with-deps-dont-like-meta-infservices/ That page specifically mentions TrueZIP having a problem with it.
This means I have to extract zip files by myself before using c3po-cmd (and I have a lot of zip files)