Many groups use GAFs for phenotypes as well as GO - e.g. planteome (cc @jhpoelen)
Conversely, pxf is generic enough for GO annotations (which are essentially normal, evolved phenotypes for genes)
It would be useful to read/write from GAFs into the phenopacket datamodel.
There are also a family of similar formats which could follow the same pattern. E.g. PAFs:
phenopackets/phenopacket-format#67
And of course the HPOA (non-phenote) TSVs
Many groups use GAFs for phenotypes as well as GO - e.g. planteome (cc @jhpoelen)
Conversely, pxf is generic enough for GO annotations (which are essentially normal, evolved phenotypes for genes)
It would be useful to read/write from GAFs into the phenopacket datamodel.
There are also a family of similar formats which could follow the same pattern. E.g. PAFs:
phenopackets/phenopacket-format#67
And of course the HPOA (non-phenote) TSVs