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Minor patch for 1.0.1 release (#667)
* Added utils import for dash-bio-utils stub package * Adding Ideogram updates * Changelog and Version update * Rebuild after version update * Linting fixes * Updated dev requirements for tests
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‎CHANGELOG.md‎

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# Changelog
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## [1.0.1] - 2022-01-19
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### Changed
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* [#652](https://github.com/plotly/dash-bio/pull/652) Added support for dash-bio-utils stub package and deprecation warning.
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* [#652](https://github.com/plotly/dash-bio/pull/652) Updated Ideogram version, props and removed support for old versions of ideogram (for more info see [#393](https://github.com/plotly/dash-bio/pull/393)).
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## [1.0.0] - 2022-01-17
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### Changed
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* [#589](https://github.com/plotly/dash-bio/pull/593) Merged dash-bio-utils into the dash bio package namespace.
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### Fixed
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* [#646](https://github.com/plotly/dash-bio/pull/646) Fixed dendrogram domain whitespaces for Clustergram when dendrogram property is not set for either axis (for more infor see [#644](https://github.com/plotly/dash-bio/issues/644)).
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* [#646](https://github.com/plotly/dash-bio/pull/646) Fixed dendrogram domain whitespaces for Clustergram when dendrogram property is not set for either axis (for more info see [#644](https://github.com/plotly/dash-bio/issues/644)).
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## [0.9.0] - 2021-12-14
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‎DESCRIPTION‎

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Package: dashBio
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Title: Open-source Bioinformatics Components for Dash
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Version: 1.0.0
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Version: 1.0.1
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Description: A suite of components that makes it simpler to analyze and visualize bioinformatics data and interact with them in a Dash application.
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Depends: R (>= 3.0.2), manhattanly
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Imports: dash

‎R/dashbioIdeogram.R‎

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# AUTO GENERATED FILE - DO NOT EDIT
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dashbioIdeogram <- function(id=NULL, ancestors=NULL, annotationHeight=NULL, annotationTracks=NULL, annotations=NULL, annotationsColor=NULL, annotationsData=NULL, annotationsLayout=NULL, annotationsPath=NULL, assembly=NULL, barWidth=NULL, brush=NULL, brushData=NULL, chrHeight=NULL, chrMargin=NULL, chrWidth=NULL, chromosomes=NULL, className=NULL, container=NULL, dataDir=NULL, filterable=NULL, fullChromosomeLabels=NULL, histogramScaling=NULL, homology=NULL, loading_state=NULL, localOrganism=NULL, organism=NULL, orientation=NULL, perspective=NULL, ploidy=NULL, ploidyDesc=NULL, rangeSet=NULL, resolution=NULL, rotatable=NULL, rotated=NULL, sex=NULL, showAnnotTooltip=NULL, showBandLabels=NULL, showChromosomeLabels=NULL, showFullyBanded=NULL, showNonNuclearChromosomes=NULL, style=NULL) {
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dashbioIdeogram <- function(id=NULL, accessToken=NULL, ancestors=NULL, annotationHeight=NULL, annotationTracks=NULL, annotations=NULL, annotationsColor=NULL, annotationsData=NULL, annotationsLayout=NULL, annotationsPath=NULL, assembly=NULL, barWidth=NULL, brush=NULL, brushData=NULL, chrHeight=NULL, chrMargin=NULL, chrWidth=NULL, chromosomeScale=NULL, chromosomes=NULL, className=NULL, container=NULL, dataDir=NULL, demarcateCollinearChromosomes=NULL, filterable=NULL, fullChromosomeLabels=NULL, geometry=NULL, heatmaps=NULL, histogramScaling=NULL, homology=NULL, legend=NULL, loading_state=NULL, organism=NULL, orientation=NULL, perspective=NULL, ploidy=NULL, ploidyDesc=NULL, rangeSet=NULL, resolution=NULL, rotatable=NULL, rotated=NULL, rows=NULL, sex=NULL, showAnnotTooltip=NULL, showBandLabels=NULL, showChromosomeLabels=NULL, showFullyBanded=NULL, showNonNuclearChromosomes=NULL, style=NULL) {
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props <- list(id=id, ancestors=ancestors, annotationHeight=annotationHeight, annotationTracks=annotationTracks, annotations=annotations, annotationsColor=annotationsColor, annotationsData=annotationsData, annotationsLayout=annotationsLayout, annotationsPath=annotationsPath, assembly=assembly, barWidth=barWidth, brush=brush, brushData=brushData, chrHeight=chrHeight, chrMargin=chrMargin, chrWidth=chrWidth, chromosomes=chromosomes, className=className, container=container, dataDir=dataDir, filterable=filterable, fullChromosomeLabels=fullChromosomeLabels, histogramScaling=histogramScaling, homology=homology, loading_state=loading_state, localOrganism=localOrganism, organism=organism, orientation=orientation, perspective=perspective, ploidy=ploidy, ploidyDesc=ploidyDesc, rangeSet=rangeSet, resolution=resolution, rotatable=rotatable, rotated=rotated, sex=sex, showAnnotTooltip=showAnnotTooltip, showBandLabels=showBandLabels, showChromosomeLabels=showChromosomeLabels, showFullyBanded=showFullyBanded, showNonNuclearChromosomes=showNonNuclearChromosomes, style=style)
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props <- list(id=id, accessToken=accessToken, ancestors=ancestors, annotationHeight=annotationHeight, annotationTracks=annotationTracks, annotations=annotations, annotationsColor=annotationsColor, annotationsData=annotationsData, annotationsLayout=annotationsLayout, annotationsPath=annotationsPath, assembly=assembly, barWidth=barWidth, brush=brush, brushData=brushData, chrHeight=chrHeight, chrMargin=chrMargin, chrWidth=chrWidth, chromosomeScale=chromosomeScale, chromosomes=chromosomes, className=className, container=container, dataDir=dataDir, demarcateCollinearChromosomes=demarcateCollinearChromosomes, filterable=filterable, fullChromosomeLabels=fullChromosomeLabels, geometry=geometry, heatmaps=heatmaps, histogramScaling=histogramScaling, homology=homology, legend=legend, loading_state=loading_state, organism=organism, orientation=orientation, perspective=perspective, ploidy=ploidy, ploidyDesc=ploidyDesc, rangeSet=rangeSet, resolution=resolution, rotatable=rotatable, rotated=rotated, rows=rows, sex=sex, showAnnotTooltip=showAnnotTooltip, showBandLabels=showBandLabels, showChromosomeLabels=showChromosomeLabels, showFullyBanded=showFullyBanded, showNonNuclearChromosomes=showNonNuclearChromosomes, style=style)
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if (length(props) > 0) {
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props <- props[!vapply(props, is.null, logical(1))]
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}
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component <- list(
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props = props,
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type = 'Ideogram',
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namespace = 'dash_bio',
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propNames = c('id', 'ancestors', 'annotationHeight', 'annotationTracks', 'annotations', 'annotationsColor', 'annotationsData', 'annotationsLayout', 'annotationsPath', 'assembly', 'barWidth', 'brush', 'brushData', 'chrHeight', 'chrMargin', 'chrWidth', 'chromosomes', 'className', 'container', 'dataDir', 'filterable', 'fullChromosomeLabels', 'histogramScaling', 'homology', 'loading_state', 'localOrganism', 'organism', 'orientation', 'perspective', 'ploidy', 'ploidyDesc', 'rangeSet', 'resolution', 'rotatable', 'rotated', 'sex', 'showAnnotTooltip', 'showBandLabels', 'showChromosomeLabels', 'showFullyBanded', 'showNonNuclearChromosomes', 'style'),
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propNames = c('id', 'accessToken', 'ancestors', 'annotationHeight', 'annotationTracks', 'annotations', 'annotationsColor', 'annotationsData', 'annotationsLayout', 'annotationsPath', 'assembly', 'barWidth', 'brush', 'brushData', 'chrHeight', 'chrMargin', 'chrWidth', 'chromosomeScale', 'chromosomes', 'className', 'container', 'dataDir', 'demarcateCollinearChromosomes', 'filterable', 'fullChromosomeLabels', 'geometry', 'heatmaps', 'histogramScaling', 'homology', 'legend', 'loading_state', 'organism', 'orientation', 'perspective', 'ploidy', 'ploidyDesc', 'rangeSet', 'resolution', 'rotatable', 'rotated', 'rows', 'sex', 'showAnnotTooltip', 'showBandLabels', 'showChromosomeLabels', 'showFullyBanded', 'showNonNuclearChromosomes', 'style'),
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package = 'dashBio'
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)
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‎R/internal.R‎

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.dashBio_js_metadata <- function() {
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deps_metadata <- list(`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-alignment.js',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, async = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-circos.js',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, async = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-ideogram.js',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, async = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-igv.js',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, async = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-pileup.js',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, async = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-moleculeviewer2.js',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, async = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-moleculeviewer3.js',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, async = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-needle.js',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, async = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-nglmoleculeviewer.js',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, async = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-onco.js',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, async = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-sequence.js',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, async = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-speck.js',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, async = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-jsme.js',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, async = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-alignment.js.map',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, dynamic = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-circos.js.map',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, dynamic = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-ideogram.js.map',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, dynamic = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-igv.js.map',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, dynamic = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-pileup.js.map',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, dynamic = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-moleculeviewer2.js.map',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, dynamic = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-moleculeviewer3.js.map',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, dynamic = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-needle.js.map',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, dynamic = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-nglmoleculeviewer.js.map',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, dynamic = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-onco.js.map',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, dynamic = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-sequence.js.map',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, dynamic = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-speck.js.map',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, dynamic = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'async-jsme.js.map',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, dynamic = TRUE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'bundle.js',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE), class = "html_dependency"),
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`dash_bio` = structure(list(name = "dash_bio",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'bundle.js.map',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, dynamic = TRUE), class = "html_dependency"),
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`dash_bio-shared` = structure(list(name = "dash_bio-shared",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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script = 'dash_bio-shared.js',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",
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all_files = FALSE, async = TRUE), class = "html_dependency"),
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`dash_bio-shared` = structure(list(name = "dash_bio-shared",
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version = "1.0.0", src = list(href = NULL,
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version = "1.0.1", src = list(href = NULL,
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file = "deps"), meta = NULL,
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script = 'dash_bio-shared.js.map',
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stylesheet = NULL, head = NULL, attachment = NULL, package = "dashBio",

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