Add VariantMap Component (#567)

* Initial addition of variantmap component

* Updated prop descriptions and defaults

* Linting fixes

* Increase timeout for test

* Updating percy snapshot

* Adding in kwargs for arbitrary layout args

* Increased CI timeout

* Updated 3dmol version

* Fixing ci

* Updating test

* Updated test

* Re-running test

* Re-running test

Author: HammadTheOne

.circleci/config.yml

@@ -96,11 +96,11 @@ jobs:
 
             - run:
                 name: Install requirements
-                no_output_timeout: 20m
                 command: |
                     . venv/bin/activate
                     pip install --upgrade pip
                     pip install --progress-bar off -r tests/requirements.txt --quiet
+                no_output_timeout: 20m
 
             - save_cache:
                 key: deps1-{{ .Branch }}-{{ checksum "dev-requirements.txt" }}-{{ checksum "tests/requirements.txt" }}-{{ checksum "ver.txt" }}-{{ checksum ".circleci/config.yml" }}
@@ -139,6 +139,7 @@ jobs:
                     cd dist
                     find . -name "*.gz" | xargs pip install --progress-bar off --no-cache-dir --ignore-installed --quiet && cd ..
                     pytest --nopercyfinalize tests/integration
+                no_output_timeout: 20m
 
             - run:
                 name: Run unit tests

CHANGELOG.md

@@ -7,6 +7,7 @@
 * [#575](https://github.com/plotly/dash-bio/pull/575) Bumped Ideogram version to 1.6.0 to fix erratic annotations behavior (for more info see [#524](https://github.com/plotly/dash-bio/issues/524)).
 
 ### Added
+* [#567](https://github.com/plotly/dash-bio/pull/567) Added VariantMap component (see [#504](https://github.com/plotly/dash-bio/pull/504) for original PR).
 * [#573](https://github.com/plotly/dash-bio/pull/573) Added the ability to configure the FornaContainer hover info with `hoverPattern` prop and interpolated node keys (for more info see [#519](https://github.com/plotly/dash-bio/issues/519)).
 
 ## [0.7.1] - 2021-07-26

R/dashbioNeedlePlot.R

@@ -1,16 +1,16 @@
 # AUTO GENERATED FILE - DO NOT EDIT
 
-dashbioNeedlePlot <- function(id=NULL, clickData=NULL, domainStyle=NULL, margin=NULL, mutationData=NULL, needleStyle=NULL, rangeSlider=NULL, xlabel=NULL, ylabel=NULL) {
+dashbioNeedlePlot <- function(id=NULL, clickData=NULL, domainStyle=NULL, height=NULL, margin=NULL, mutationData=NULL, needleStyle=NULL, rangeSlider=NULL, width=NULL, xlabel=NULL, ylabel=NULL) {
 
-    props <- list(id=id, clickData=clickData, domainStyle=domainStyle, margin=margin, mutationData=mutationData, needleStyle=needleStyle, rangeSlider=rangeSlider, xlabel=xlabel, ylabel=ylabel)
+    props <- list(id=id, clickData=clickData, domainStyle=domainStyle, height=height, margin=margin, mutationData=mutationData, needleStyle=needleStyle, rangeSlider=rangeSlider, width=width, xlabel=xlabel, ylabel=ylabel)
     if (length(props) > 0) {
         props <- props[!vapply(props, is.null, logical(1))]
     }
     component <- list(
         props = props,
         type = 'NeedlePlot',
         namespace = 'dash_bio',
-        propNames = c('id', 'clickData', 'domainStyle', 'margin', 'mutationData', 'needleStyle', 'rangeSlider', 'xlabel', 'ylabel'),
+        propNames = c('id', 'clickData', 'domainStyle', 'height', 'margin', 'mutationData', 'needleStyle', 'rangeSlider', 'width', 'xlabel', 'ylabel'),
         package = 'dashBio'
         )
 

dash_bio/NeedlePlot.py

@@ -35,6 +35,9 @@ class NeedlePlot(Component):
         Sets the angle at which the domain annotation text is drawn
         with respect to the horizontal.
 
+- height (number | string; default 800):
+    Height of the Plot.
+
 - margin (dict; default {t: 100, l: 40, r: 0, b: 40}):
     Margins of the plot.
 
@@ -71,18 +74,21 @@ class NeedlePlot(Component):
 - rangeSlider (boolean; default False):
     If True, enables a rangeslider for the x-axis.
 
+- width (number | string; default 700):
+    Width of the Plot.
+
 - xlabel (string; optional):
     Title of the x-axis.
 
 - ylabel (string; optional):
     Title of the y-axis."""
     @_explicitize_args
-    def __init__(self, id=Component.UNDEFINED, mutationData=Component.UNDEFINED, margin=Component.UNDEFINED, xlabel=Component.UNDEFINED, ylabel=Component.UNDEFINED, rangeSlider=Component.UNDEFINED, needleStyle=Component.UNDEFINED, domainStyle=Component.UNDEFINED, clickData=Component.UNDEFINED, **kwargs):
-        self._prop_names = ['id', 'clickData', 'domainStyle', 'margin', 'mutationData', 'needleStyle', 'rangeSlider', 'xlabel', 'ylabel']
+    def __init__(self, id=Component.UNDEFINED, mutationData=Component.UNDEFINED, margin=Component.UNDEFINED, xlabel=Component.UNDEFINED, ylabel=Component.UNDEFINED, rangeSlider=Component.UNDEFINED, needleStyle=Component.UNDEFINED, domainStyle=Component.UNDEFINED, clickData=Component.UNDEFINED, width=Component.UNDEFINED, height=Component.UNDEFINED, **kwargs):
+        self._prop_names = ['id', 'clickData', 'domainStyle', 'height', 'margin', 'mutationData', 'needleStyle', 'rangeSlider', 'width', 'xlabel', 'ylabel']
         self._type = 'NeedlePlot'
         self._namespace = 'dash_bio'
         self._valid_wildcard_attributes =            []
-        self.available_properties = ['id', 'clickData', 'domainStyle', 'margin', 'mutationData', 'needleStyle', 'rangeSlider', 'xlabel', 'ylabel']
+        self.available_properties = ['id', 'clickData', 'domainStyle', 'height', 'margin', 'mutationData', 'needleStyle', 'rangeSlider', 'width', 'xlabel', 'ylabel']
         self.available_wildcard_properties =            []
         _explicit_args = kwargs.pop('_explicit_args')
         _locals = locals()

dash_bio/__init__.py

@@ -9,6 +9,7 @@
 from .component_factory._manhattan import ManhattanPlot
 from .component_factory._volcano import VolcanoPlot
 from .component_factory._clustergram import Clustergram
+from .component_factory._variant import VariantMap
 
 if not hasattr(_dash, '__plotly_dash') and not hasattr(_dash, 'development'):
     print('Dash was not successfully imported. '