single_sample_new.sh

#!/bin/bash -l

# declare the name for this job 

#SBATCH --job-name=RUNTIME

# Distributing jobs across 5 nodes with 20 cores each node 
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=1
#SBATCH --cpus-per-task=10

# Requesting 4000 MB of RAM
#SBATCH --mem-per-cpu=4000

# request 60 hours of wall time
#SBATCH --time=60:00:00

# Dispatching job to standard partitions on discovery
#SBATCH --partition=standard

# specify your email address and when things are emailed

#SBATCH --mail-user=Quang.P.Nguyen.GR@dartmouth.edu
#SBATCH --mail-type=END,FAIL

# By default, SLURM scripts execute in your home directory, not the
# directory from which they were submitted.

cd $SLURM_SUBMIT_DIR

# Run run.R as a script to start the targets pipeline
conda activate cbea
Rscript run_new.R --ncores 10 --analysis "runtime" --remove FALSE --parallel TRUE