Late 2025 Copyright Update

whitwham · daviesrob · commit 4bfd102b990c · 2025-11-24T11:51:11.000Z
diff --git a/Makefile b/Makefile
@@ -1,6 +1,6 @@
 # Makefile for htslib, a C library for high-throughput sequencing data formats.
 #
-#    Copyright (C) 2013-2024 Genome Research Ltd.
+#    Copyright (C) 2013-2025 Genome Research Ltd.
 #
 #    Author: John Marshall <jm18@sanger.ac.uk>
 #
diff --git a/configure.ac b/configure.ac
@@ -35,7 +35,7 @@ m4_include([m4/hts_hide_dynamic_syms.m4])
 m4_include([m4/pkg.m4])
 
 dnl Copyright notice to be copied into the generated configure script
-AC_COPYRIGHT([Portions copyright (C) 2020-2024 Genome Research Ltd.
+AC_COPYRIGHT([Portions copyright (C) 2020-2025 Genome Research Ltd.
 
 This configure script is free software: you are free to change and
 redistribute it.  There is NO WARRANTY, to the extent permitted by law.])
diff --git a/cram/cram_codecs.c b/cram/cram_codecs.c
@@ -1,5 +1,5 @@
 /*
-Copyright (c) 2012-2021,2023 Genome Research Ltd.
+Copyright (c) 2012-2021,2023, 2025 Genome Research Ltd.
 Author: James Bonfield <jkb@sanger.ac.uk>
 
 Redistribution and use in source and binary forms, with or without
diff --git a/cram/cram_decode.c b/cram/cram_decode.c
@@ -1,5 +1,5 @@
 /*
-Copyright (c) 2012-2020, 2022-2024 Genome Research Ltd.
+Copyright (c) 2012-2020, 2022-2025 Genome Research Ltd.
 Author: James Bonfield <jkb@sanger.ac.uk>
 
 Redistribution and use in source and binary forms, with or without
diff --git a/cram/cram_encode.c b/cram/cram_encode.c
@@ -1,5 +1,5 @@
 /*
-Copyright (c) 2012-2020, 2022-2024 Genome Research Ltd.
+Copyright (c) 2012-2020, 2022-2025 Genome Research Ltd.
 Author: James Bonfield <jkb@sanger.ac.uk>
 
 Redistribution and use in source and binary forms, with or without
diff --git a/cram/open_trace_file.c b/cram/open_trace_file.c
@@ -32,7 +32,7 @@ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 */
 
 /*
-Copyright (c) 2008, 2009, 2013, 2014-2015, 2018-2020 Genome Research Ltd.
+Copyright (c) 2008, 2009, 2013, 2014-2015, 2018-2020, 2025 Genome Research Ltd.
 Author: James Bonfield <jkb@sanger.ac.uk>
 
 Redistribution and use in source and binary forms, with or without
diff --git a/hts.c b/hts.c
@@ -1,6 +1,6 @@
 /*  hts.c -- format-neutral I/O, indexing, and iterator API functions.
 
-    Copyright (C) 2008, 2009, 2012-2024 Genome Research Ltd.
+    Copyright (C) 2008, 2009, 2012-2025 Genome Research Ltd.
     Copyright (C) 2012, 2013 Broad Institute.
 
     Author: Heng Li <lh3@sanger.ac.uk>
diff --git a/hts_internal.h b/hts_internal.h
@@ -1,6 +1,6 @@
 /*  hts_internal.h -- internal functions; not part of the public API.
 
-    Copyright (C) 2015-2016, 2018-2020 Genome Research Ltd.
+    Copyright (C) 2015-2016, 2018-2020, 2025 Genome Research Ltd.
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal
diff --git a/hts_probe_cc.sh b/hts_probe_cc.sh
@@ -2,7 +2,7 @@
 
 # Check compiler options for non-configure builds and create Makefile fragment
 #
-#    Copyright (C) 2022-2024 Genome Research Ltd.
+#    Copyright (C) 2022-2025 Genome Research Ltd.
 #
 #    Author: Rob Davies <rmd@sanger.ac.uk>
 #
diff --git a/htslib/khash.h b/htslib/khash.h
@@ -1,7 +1,7 @@
 /* The MIT License
 
    Copyright (c) 2008, 2009, 2011 by Attractive Chaos <attractor@live.co.uk>
-   Copyright (C) 2014-2015, 2018, 2024 Genome Research Ltd.
+   Copyright (C) 2014-2015, 2018, 2024-2025 Genome Research Ltd.
 
    Permission is hereby granted, free of charge, to any person obtaining
    a copy of this software and associated documentation files (the
diff --git a/htslib/sam.h b/htslib/sam.h
@@ -1,7 +1,7 @@
 /// @file htslib/sam.h
 /// High-level SAM/BAM/CRAM sequence file operations.
 /*
-    Copyright (C) 2008, 2009, 2013-2023 Genome Research Ltd.
+    Copyright (C) 2008, 2009, 2013-2023, 2025 Genome Research Ltd.
     Copyright (C) 2010, 2012, 2013 Broad Institute.
 
     Author: Heng Li <lh3@sanger.ac.uk>
diff --git a/kstring.c b/kstring.c
@@ -1,7 +1,7 @@
 /* The MIT License
 
    Copyright (C) 2011 by Attractive Chaos <attractor@live.co.uk>
-   Copyright (C) 2013-2018, 2020-2021, 2023 Genome Research Ltd.
+   Copyright (C) 2013-2018, 2020-2021, 2023, 2025 Genome Research Ltd.
 
    Permission is hereby granted, free of charge, to any person obtaining
    a copy of this software and associated documentation files (the
diff --git a/sam_mods.c b/sam_mods.c
@@ -1,6 +1,6 @@
 /*  sam_mods.c -- Base modification handling in SAM and BAM.
 
-    Copyright (C) 2020-2024 Genome Research Ltd.
+    Copyright (C) 2020-2025 Genome Research Ltd.
 
     Author: James Bonfield <jkb@sanger.ac.uk>
 

Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`# Makefile for htslib, a C library for high-throughput sequencing data formats.`
`2`	`2`	`#`
`3`		`-# Copyright (C) 2013-2024 Genome Research Ltd.`
	`3`	`+# Copyright (C) 2013-2025 Genome Research Ltd.`
`4`	`4`	`#`
`5`	`5`	`# Author: John Marshall <[email protected]>`
`6`	`6`	`#`
-Original file line number
+Diff line change
@@ @@ -1,5 +1,5 @@ @@
 /*
 -Copyright (c) 2012-2021,2023 Genome Research Ltd.
 +Copyright (c) 2012-2021,2023, 2025 Genome Research Ltd.
 Author: James Bonfield <[email protected]>
 Redistribution and use in source and binary forms, with or without
Original file line number	Diff line number	Diff line change
`@@ -2,7 +2,7 @@`
`2`	`2`
`3`	`3`	`# Check compiler options for non-configure builds and create Makefile fragment`
`4`	`4`	`#`
`5`		`-# Copyright (C) 2022-2024 Genome Research Ltd.`
	`5`	`+# Copyright (C) 2022-2025 Genome Research Ltd.`
`6`	`6`	`#`
`7`	`7`	`# Author: Rob Davies <[email protected]>`
`8`	`8`	`#`