Hi, I got the same error for samtools while running configure as shown below:
Command used - ./configure --with-samtools=./src/include/samtools-legacy_0.1.19_debian
Error:
checking for sam_open in -lbam... no
checking samtools... failed
configure: error: either specify a valid samtools installation with --with-samtools=DIR or disable samtools usage with --without-samtools
I tried the export commands as well but it didn't work.
Any help in resolving this issue is appreciated.
Thank you
Hi, I got the same error for samtools while running configure as shown below:
Command used - ./configure --with-samtools=./src/include/samtools-legacy_0.1.19_debian
Error:
checking for sam_open in -lbam... no
checking samtools... failed
configure: error: either specify a valid samtools installation with --with-samtools=DIR or disable samtools usage with --without-samtools
I tried the export commands as well but it didn't work.
Any help in resolving this issue is appreciated.
Thank you