Build and Test

Batch updates to `ManifestDb` in `(multilayer)_preprocess_tod` (#1519) #4960

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Run time

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Job	Run time
macos-15 with Python-3.10	8m 43s
ubuntu-latest with Python-3.10	10m 45s
ubuntu-latest with Python-3.13	13m 39s
macos-15 with Python-3.13	8m 39s
	41m 46s