Skip to content

CHANGELOG.md

Latest commit

 

History

History
331 lines (196 loc) · 9.93 KB

CHANGELOG.md

File metadata and controls

331 lines (196 loc) · 9.93 KB
Raw

1.1.4 - 2023-10-06

  • Downgrade pytz to 2023.3

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.1.4

1.1.3 - 2023-10-03

  • Update terra-jupyter-base to 1.1.3
    • Downgrade notebook to 6.5.4 and jupyterlab-server to 2.23.0

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.1.3

1.1.2 - 2023-07-31

  • Update terra-jupyter-base to 1.1.2
    • Upgrade Terra Notebook Utils to 0.13.0

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.1.2

1.1.1 - 2023-07-06

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.1.1

1.1.0 - 2023-06-23

  • Update python 3.7 to 3.10

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.1.0

1.0.15 - 2023-03-13T17:26:34.179905Z

  • Update terra-jupyter-base to 1.0.14
    • Include jupyter lab build step

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.15

1.0.14 - 2023-02-09T14:18:49.058004Z

  • Update terra-jupyter-base to 1.0.12
    • Add cloud.google.com gpg key.

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.14

1.0.13 - 2022-06-23T10:58:12.961300Z

  • Update terra-jupyter-base to 1.0.10
    • Fix leo_url variable in workspace_cromwell.py script for AoU projects

1.0.12 - 2022-06-23T10:58:12.961300Z

  • reverted, do not use

1.0.11 - 2022-06-09

  • Switch to requirements.txt file

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.11

1.0.10 - 2022-06-03T18:35:22.435328Z

  • reverted, do not use

1.0.9 - 2022-05-20T18:06:39.493915Z

  • Update terra-jupyter-base to 1.0.9
    • Fix adding workspace_cromwell.py script to manage Cromwell App

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.9

1.0.8 - 2022-05-17T17:14:41.284361Z

  • Update terra-jupyter-base to 1.0.8
    • Add script that manages Cromwell app

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.8

1.0.7 - 2022-05-10T22:08:25.979318Z

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.7

1.0.6 - 2022-05-02T14:33:23.968430Z

  • Update terra-jupyter-base to 1.0.6
    • use new nvidia key

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.6

1.0.5 - 2022-04-17

  • Update terra-jupyter-base to 1.0.5
    • Install gcloud alpha storage dependency

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.5

1.0.4 - 2022-02-02T20:47:42.360741Z

  • Update terra-jupyter-base to 1.0.4
    • update notebook_dir to $HOME; install scikit-learn-intelex, xgboost

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.4

1.0.3 - 2022-01-06T18:21:41.192855Z

  • Update terra-jupyter-base to 1.0.3
    • Bumping Google Deeplearning image to 2.7, removing gcc-6 install due to package problems

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.3

1.0.2 - 2021-10-07T14:47:43.398118Z

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.2

1.0.1 - 2021-09-10T15:10:44.113546Z

  • Update terra-jupyter-base to 1.0.1
    • Update base image to gcr.io/deeplearning-platform-release/tf2-gpu.2-6 to support TensorFlow 2.6.0
    • Fix multipart Jupyter uploads

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.1

1.0.0 - 2021-06-09T16:18:53.809656Z

  • Update terra-jupyter-base to 1.0.0
    • use gcr.io/deeplearning-platform-release/base-cu110:latest as base

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.0

0.1.2 - 2021-05-05T16:19:57.509127Z

  • Update terra-jupyter-base to 0.0.20
    • [IA-1644] Install crcmod in base image to support GCS composite objects

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.1.2

0.1.1 - 2021-04-5

  • Add bug fix back in for python package ggplot (see yhat/ggpy#662)

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.1.1

0.1.0 - 2021-03-20

  • Update all Python package versions by unpinning them.
  • Add package plotnine. Fixes DataBiosphere#126
  • Replace package tensorflow with tensorflow_cpu to get rid of the warnings about GPUs being unavailable for Terra Cloud Runtimes.
  • Add package google-resumable-media as an explicit dependency to ensure a more recent version of it is used. pandas-gbq depends on it for table uploads.
  • Work around lack of 'bigquery.readsessions.create' permission [CA-1179] by uninstalling the dependency google-cloud-bigquery-storage so that flag --use_rest_api can be used with %%bigquery to use the older mechanism for data transfer.

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.1.0

0.0.23 - 2021-01-20T16:00:48.318Z

  • Update terra-jupyter-base to 0.0.19
    • [IA-2472] Turn on debug-level logging when JUPYTER_DEBUG_LOGGING env var is true

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.23

0.0.22 - 2020-12-09T18:50:57.262Z

  • [IA-2420] Update to a newer version of pymc3

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.22

0.0.21 - 2020-12-02T17:59:36.411Z

  • Update terra-jupyter-base to 0.0.18
    • bump terra-notebook-utils version to 0.7.0 and move it to base image

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.21

0.0.20 - 2020-11-16T18:11:40.785376Z

  • Update terra-jupyter-base to 0.0.17
    • remove miniconda

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.20

0.0.19 - 2020-11-10T13:26:19.077Z

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.19

0.0.18 - 2020-10-26T20:13:57.706Z

  • Update terra-jupyter-base to 0.0.16
    • add keychain to base image

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.18

0.0.17 - 2020-10-08T18:42:19.709Z

  • Update terra-jupyter-base to 0.0.15
    • include pip binary installation location in PATH

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.17

0.0.16 - 2020-09-02T15:12:19.878Z

  • Update terra-jupyter-base to 0.0.14
    • Terminal now opens to /notebooks directory where PD is mounted

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.16

0.0.15 - 2020-08-18T13:43:26.223Z

  • Update terra-jupyter-base to 0.0.13
    • update notebook to 6.1.1, tornado to 5.1.1

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.15

0.0.14 - 07/27/2020

  • Update terra-jupyter-base image version to 0.0.12

Image URL us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.14

0.0.13 - 06/15/2020

  • Update terra-jupyter-base image version to 0.0.11
  • Add terra-notebook-utils package

Image URL us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.13

0.0.12 - 05/18/2020

  • Update terra-jupyter-base image version to 0.0.10
    • Adds jupyter notebook extension collapsible headers and code-folding

Image URL us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.12

0.0.11 - 04/17/2020

  • Add Google Cloud support to pysam.

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.11

0.0.10 - 02/25/2020

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.10

0.0.9 - 02/05/2020

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.9

0.0.8 - 01/17/2020

  • Update terra-jupyter-base version to 0.0.7
  • Make docker image locally runnable with:
    • docker run --rm -it -p 8000:8000 <image>
  • Remove FISS from this image since it's now included in the base
  • Add OpenJDK 11

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.8

0.0.7 - 01/15/2020

  • Install pandas-profiling version 2.4.0

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.7

0.0.6 - 12/12/2019

  • Upgrade pandas from 0.23.4 to 0.25.3
  • Upgrade pandas-gbq from 0.11.0 to 0.12.0
  • Upgrade google-cloud-bigquery to 1.23.1
  • Upgrade google-cloud-bigquery-datatransfer to 0.4.1
  • Upgrade google-cloud-datastore to 1.10.0
  • Upgrade google-cloud-resource-manager to 0.30.0
  • Upgrade google-cloud-storage to 1.23.0
  • Upgrade firecloud to 0.16.25
  • Upgrade six to 1.13.0
  • Upgrade setuptools to 42.0.2
  • Install pdoc3 instead of pdoc

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.6

0.0.5 - 11/26/2019

  • Fix WORKSPACE_BUCKET environment variable

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.5

0.0.4 - 11/16/2019

  • Update terra-jupyter-base version to 0.0.5
  • Removed apt-get upgrade for security purposes

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.4

0.0.3 - 10/18/2019

  • Update terra-jupyter-base version to 0.0.4

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.3

0.0.2 - 10/10/2019

Use jupyter base image 0.0.3

0.0.1 - 08/28/2019

  • added pandas-gqb
  • removed jupyter, jupyter-lab, unzip as they are in they base image
  • removed google-cloud-core, was already satisfied as a dependency from other packages
Package Former Version Current Version
google-api-core 1.5.0 1.6.0
keras 2.2.0 2.1.6
markdown 2.6.9 2.4.1
pysam 0.13 0.15.1
scipy 1.0.0 1.2
tensorflow 1.9.0 2.0.0a0
certifi 2016.2.28 2017.4.17
google-cloud-bigquery 1.7.0 1.9.0

Image URL: us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:0.0.1