diff --git a/workflow/envs/cyrcular.post-deploy.sh b/workflow/envs/cyrcular.post-deploy.sh deleted file mode 100644 index fe44fa11..00000000 --- a/workflow/envs/cyrcular.post-deploy.sh +++ /dev/null @@ -1,6 +0,0 @@ -# this is needed to have the `ruget` binary installed by `plotly_kaleido` -# available in the PATH, it is removed from PATH after installation of cyrcular -PATH="$HOME/.cargo/bin:$PATH" -# TODO: merge branch `annotate` in cyrcular and create bioconda recipe -cargo install --git https://github.com/tedil/cyrcular.git --branch annotate --rev 44ba5274b9f2aee7d193b774343acaccf0edec53 --locked --root "${CONDA_PREFIX}" -PATH=${PATH#[^:]*:} diff --git a/workflow/envs/cyrcular.yaml b/workflow/envs/cyrcular.yaml index 90287a7f..4ece3d20 100644 --- a/workflow/envs/cyrcular.yaml +++ b/workflow/envs/cyrcular.yaml @@ -2,17 +2,4 @@ channels: - conda-forge - bioconda dependencies: - - rust =1.67.1 - - git =2.35.0 - - compilers =1.3.0 - - pkg-config =0.29.2 - - make =4.3 - - cmake =3.21.3 - - gsl =2.7 - - libcblas =3.9.0 - - openssl =3.0.0 - - zlib >=1.2.12,<1.3 - - bzip2 =1.0.8 - - xz =5.2.5 - - clangdev =13.0.0 - - blis =0.8.1 + - cyrcular ==0.3.0