I wonder if you guys had plans to add annotation to the transcriptome?

[Buuntu]

Do you guys have any plans to add an annotation pipeline to the transcriptome (like through Trinotate). I am struggling with that portion of the analysis and really like the snakemake workflows you guys make, they are very helpful in developing my own pipelines (working on a Trinity->Kallisto->Trinotate->Deseq2 pipeline with Snakemake).

[johanneskoester]

Thanks a lot for the suggestion! So, there are currently no concrete plans but it is definitely a good idea. We would be happy to see any contributions in this direction. I am keeping this open as a reminder for anybody interested.