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Description
Software Versions
snakemake package: https://conda.anaconda.org/bioconda/noarch/snakemake-9.17.1-hdfd78af_1.conda
plugin package: https://conda.anaconda.org/bioconda/noarch/snakemake-executor-plugin-slurm-2.5.4-pyhdfd78af_0.conda
slurm 24.05.5
Describe the bug
Walltime specification changed from minutes to seconds but the documentation still says minutes.
Minimal example
config.yaml in snakemake profile directory
executor: slurm
set-resources:
compile:
runtime: 60will set the walltime to 1 min and not 1 hour like before
Additional context
https://snakemake.github.io/snakemake-plugin-catalog/plugins/executor/slurm.html#using-configuration-profiles-for-resource-specifications says:
default-resources:
slurm_partition: "default_partition"
slurm_account: "your_account"
mem_mb_per_cpu: 2000
runtime: 60 # in minutes
set-resources:
special_rule:
slurm_partition: "high_mem_partition"
runtime: 180 # in minutes
mem_mb_per_cpu: 4000
cpus_per_task: 8Reactions are currently unavailable
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