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fix: software setup for the tutorial workflow
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setup_creators/environment.yaml

Lines changed: 4 additions & 13 deletions
Original file line numberDiff line numberDiff line change
@@ -2,21 +2,12 @@ channels:
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- conda-forge
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- bioconda
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dependencies:
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- snakemake-minimal >=8.4.4
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- snakemake-executor-plugin-slurm
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- snakemake-storage-plugin-fs
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- black
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- snakefmt
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- snakemake-minimal >=9.7.1
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- jinja2
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- matplotlib
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- graphviz
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- bcftools >=1.19
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- samtools =1.19.2
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- bwa =0.7.17
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- pip:
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- pysam
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# at the time of writing - 7. Feb 24 - pysam will require
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# a lower python version than snakemake, install pysam
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# using pip
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- samtools >=1.19
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- bwa ~=0.7.17
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- pygments
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- seaborn
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- pysam =0.22

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