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feat: MCP tool for unresolved spec gaps #299

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Goal\nExpose unresolved spec gaps through MCP so agents can query what is missing without running the CLI.\n\n## Why\nThis complements issue syncing and guided init by making gaps directly queryable from the graph server.\n\n## Scope\n- MCP tool returns uncovered entities and missing files\n- optional severity and source references\n- supports project filter\n\n## Related\n- #258 MCP tools for initGuided and checkIssues\n- #257 issues --check\n- #298 spec coverage report command

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