Installation Issue on Install dependencies Part : Could not build wheels for torch-scatter, #35
Description
Hello. I am trying to follow up installation on Readme.
I could process successfully until Install dependencies part.
I am using Ubuntu 24.04 LTS.
When I try to copy Install dependencies part and and run I got following logs(Simplified):
poni) anil@anil-PC:~/Desktop/Projects/PONI/dependencies/habitat-lab$ cd $PONI_ROOT/dependencies/habitat-lab
pip install -r requirements.txt
python setup.py develop --all
cd $PONI_ROOT/dependencies/habitat-sim
pip install -r requirements.txt
python setup.py install --headless --with-cuda
python -m pip install detectron2 -f https://dl.fbaipublicfiles.com/detectron2/wheels/cu102/torch1.9/index.html
pip install torch-scatter -f https://data.pyg.org/whl/torch-1.9.0+cu102.html
cd $PONI_ROOT/dependencies/astar_pycpp && make
Installed /home/anil/Desktop/Projects/PONI/dependencies/habitat-lab
Processing dependencies for habitat==0.2.1
Searching for tensorflow==1.13.1
Reading https://pypi.org/simple/tensorflow/
No local packages or working download links found for tensorflow==1.13.1
error: Could not find suitable distribution for Requirement.parse('tensorflow==1.13.1')
setup.py:419: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
assert StrictVersion(
setup.py:421: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
) >= StrictVersion("3.6"), "Must use python3.6 or newer"
running install
/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/_distutils/cmd.py:66: EasyInstallDeprecationWarning: easy_install command is deprecated.
running bdist_egg
running egg_info
writing habitat_sim.egg-info/PKG-INFO
writing dependency_links to habitat_sim.egg-info/dependency_links.txt
writing requirements to habitat_sim.egg-info/requires.txt
writing top-level names to habitat_sim.egg-info/top_level.txt
reading manifest file 'habitat_sim.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'habitat_sim.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
copying examples/settings.py -> build/lib.linux-x86_64-cpython-38/examples
copying habitat_sim/sensors/noise_models/init.py -> build/lib.linux-x86_64-cpython-38/habitat_sim/sensors/noise_models
/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'habitat_sim.sensors.noise_models.data' is absent from thepackagesconfiguration.
check.warn(importable)
copying habitat_sim/sensors/noise_models/data/redwood-depth-dist-model.npy -> build/lib.linux-x86_64-cpython-38/habitat_sim/sensors/noise_models/data
running build_ext
Traceback (most recent call last):
File "setup.py", line 239, in run
subprocess.check_output([osp.join(CMAKE_BIN_DIR, "cmake"), "--version"])
File "/home/anil/anaconda3/envs/poni/lib/python3.8/subprocess.py", line 415, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "/home/anil/anaconda3/envs/poni/lib/python3.8/subprocess.py", line 493, in run
with Popen(popenargs, **kwargs) as process:
File "/home/anil/anaconda3/envs/poni/lib/python3.8/subprocess.py", line 858, in init
self._execute_child(args, executable, preexec_fn, close_fds,
File "/home/anil/anaconda3/envs/poni/lib/python3.8/subprocess.py", line 1720, in _execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'cmake'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "setup.py", line 440, in
setup(
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/init.py", line 104, in setup
return distutils.core.setup(**attrs)
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/_distutils/core.py", line 184, in setup
return run_commands(dist)
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/_distutils/core.py", line 200, in run_commands
dist.run_commands()
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
self.run_command(cmd)
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/dist.py", line 967, in run_command
super().run_command(command)
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/command/install.py", line 87, in run
self.do_egg_install()
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/command/install.py", line 139, in do_egg_install
self.run_command('bdist_egg')
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
self.distribution.run_command(command)
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/dist.py", line 967, in run_command
super().run_command(command)
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/command/bdist_egg.py", line 167, in run
cmd = self.call_command('install_lib', warn_dir=0)
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/command/bdist_egg.py", line 153, in call_command
self.run_command(cmdname)
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
self.distribution.run_command(command)
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/dist.py", line 967, in run_command
super().run_command(command)
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/command/install_lib.py", line 11, in run
self.build()
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/_distutils/command/install_lib.py", line 110, in build
self.run_command('build_ext')
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
self.distribution.run_command(command)
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/dist.py", line 967, in run_command
super().run_command(command)
File "/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "setup.py", line 241, in run
raise RuntimeError(
RuntimeError: CMake must be installed to build the following extensions: habitat_sim._ext.habitat_sim_bindings
Looking in links: https://dl.fbaipublicfiles.com/detectron2/wheels/cu102/torch1.9/index.html
Looking in links: https://data.pyg.org/whl/torch-1.9.0+cu102.html
Collecting torch-scatter
Using cached torch_scatter-2.1.2.tar.gz (108 kB)
Preparing metadata (setup.py) ... done
Building wheels for collected packages: torch-scatter
Building wheel for torch-scatter (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [40 lines of output]
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-38
creating build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/placeholder.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/testing.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/segment_coo.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/segment_csr.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/utils.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/scatter.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
copying torch_scatter/init.py -> build/lib.linux-x86_64-cpython-38/torch_scatter
creating build/lib.linux-x86_64-cpython-38/torch_scatter/composite
copying torch_scatter/composite/softmax.py -> build/lib.linux-x86_64-cpython-38/torch_scatter/composite
copying torch_scatter/composite/std.py -> build/lib.linux-x86_64-cpython-38/torch_scatter/composite
copying torch_scatter/composite/logsumexp.py -> build/lib.linux-x86_64-cpython-38/torch_scatter/composite
copying torch_scatter/composite/init.py -> build/lib.linux-x86_64-cpython-38/torch_scatter/composite
running egg_info
writing torch_scatter.egg-info/PKG-INFO
writing dependency_links to torch_scatter.egg-info/dependency_links.txt
writing requirements to torch_scatter.egg-info/requires.txt
writing top-level names to torch_scatter.egg-info/top_level.txt
reading manifest file 'torch_scatter.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '' found under directory 'test'
adding license file 'LICENSE'
writing manifest file 'torch_scatter.egg-info/SOURCES.txt'
running build_ext
building 'torch_scatter._segment_csr_cpu' extension
creating build/temp.linux-x86_64-cpython-38
creating build/temp.linux-x86_64-cpython-38/csrc
creating build/temp.linux-x86_64-cpython-38/csrc/cpu
gcc -pthread -B /home/anil/anaconda3/envs/poni/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DWITH_PYTHON -Icsrc -I/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/torch/include -I/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/torch/include/torch/csrc/api/include -I/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/torch/include/TH -I/home/anil/anaconda3/envs/poni/lib/python3.8/site-packages/torch/include/THC -I/home/anil/anaconda3/envs/poni/include/python3.8 -c csrc/cpu/segment_csr_cpu.cpp -o build/temp.linux-x86_64-cpython-38/csrc/cpu/segment_csr_cpu.o -O3 -Wno-sign-compare -DAT_PARALLEL_OPENMP -fopenmp -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="_gcc" -DPYBIND11_STDLIB="_libstdcpp" -DPYBIND11_BUILD_ABI="_cxxabi1011" -DTORCH_EXTENSION_NAME=_segment_csr_cpu -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
csrc/cpu/segment_csr_cpu.cpp:6:10: fatal error: ATen/OpMathType.h: No such file or directory
6 | #include <ATen/OpMathType.h>
| ^~~~~~~~~~~~~~~~~~~
compilation terminated.
error: command '/usr/bin/gcc' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for torch-scatter
Running setup.py clean for torch-scatter
Failed to build torch-scatter
ERROR: Could not build wheels for torch-scatter, which is required to install pyproject.toml-based projects
g++ astar.cpp -o astar.so -O3 -Wall -shared -fpic