About superkingdom-phylum-....-genus-species

[yongrenr]

Hello, I think Metabuli is a very good job. It can present the classification results quickly and visually. However, during my usage, I encountered a problem: I downloaded the pre-built library of gtdb+virus+human. And make predictions, the results are as follows:

I would like to know if I can directly obtain the specific prediction results of Metabuli for them, such as superkingdom, phylum, genus, etc. Because I have found that some taxids cannot be queried on both NCBI and GTDB.

[jaebeom-kim]

Hi! Thank you for waiting!
We made a new command in the command-line version of Metabuli.
It is classifiedRefiner. Could you please try this?
https://github.com/steineggerlab/Metabuli?tab=readme-ov-file#refine-classification-file