Issues

• 'ModulaNotFoundError' appears: No module named 'scvi. _compat'

  theislab/scgen#105 · Filter by author llzl84 opened on Sep 18, 2025
  2

• Error with model.batch_removal(): AttributeError: 'NoneType' object has no attribute 'sqrt'

  theislab/scgen#103 · Filter by author Xiaoke-666 opened on Apr 9, 2025
  1

• idea/question (estimating gene mutation)

  theislab/scgen#100 · Filter by author muntajihad opened on Oct 7, 2024

• Tutorial example not working

  theislab/scgen#99 · Filter by author thebeancounter opened on Sep 15, 2024
  2

• Is it possible to keep the original distribution in the output space?

  theislab/scgen#98 · Filter by author HelloWorldLTY opened on Aug 31, 2024

• dependencies update required

  theislab/scgen#97 · Filter by author janursa opened on Aug 1, 2024
  4

• Restarting model training from a saved checkpoint.

  theislab/scgen#96 · Filter by author ediriwas opened on Jul 18, 2024

• Results are not consist with [tutorials/scgen_perturbation_prediction.ipynb]

  theislab/scgen#95 · Filter by author liaowenyu opened on Jul 8, 2024

• get_marginal_ll not implemented for perturbation example model

  theislab/scgen#93 · Filter by author ajaynadig opened on Jun 6, 2024

• TypeError: Can't instantiate abstract class SCGEN with abstract methods setup_anndata

  theislab/scgen#91 · Filter by author GGboy-Zzz opened on Nov 20, 2023
  4

• difference between SCGEN and SCGENVAE

  theislab/scgen#89 · Filter by author huawen-poppy opened on Oct 8, 2023

• scgen Literal deprecation error

  theislab/scgen#88 · Filter by author abuchin opened on Oct 5, 2023
  1

• Question about get_decoded_expression() and predict() functions

  theislab/scgen#85 · Filter by author znavidi opened on Aug 14, 2023

• Error in network.batch_removal() due to missing positional argument in AnnData.concatenate()

  theislab/scgen#83 · Filter by author macelik opened on Jul 7, 2023
  5

• Update depreciated AnnData.concatenate

  theislab/scgen#82 · Filter by author quentinblampey opened on Jun 21, 2023
  2

• Accurate requirements to setup the environment on Windows

  theislab/scgen#81 · Filter by author pbilinskyi opened on May 11, 2023

• How to reproduce paper results

  theislab/scgen#80 · Filter by author SZ-qing opened on May 6, 2023
  5

• How to use data with categories unseen by a trained model

  theislab/scgen#74 · Filter by author ma-jacques opened on Oct 7, 2022
  1

• Unequal size of perturbated size

  theislab/scgen#72 · Filter by author XinyeZhao opened on Sep 12, 2022

• Inconsistent batch removal when loading saved scGEN model

  theislab/scgen#71 · Filter by author TemiLeke opened on Jun 19, 2022

• Errors while reading salmonella h5ad files

  theislab/scgen#70 · Filter by author bitcometz opened on May 7, 2022
  1

• labels_key mismatch in scgen.SCGEN.setup_anndata()

  theislab/scgen#69 · Filter by author johnjeang opened on May 6, 2022

• Questions about drug perturbation prediction using cell line data

  theislab/scgen#68 · Filter by author GA-1101 opened on Apr 27, 2022

• Questions about building predictive models

  theislab/scgen#67 · Filter by author GA-1101 opened on Apr 26, 2022

• Questions on batch removal tutorial

  theislab/scgen#58 · Filter by author Pazuzzilla opened on Nov 16, 2021
  2