Skip to content

Update DGE chapter #421

@LuisHeinzlmeier

Description

@LuisHeinzlmeier
  • remove single-cell specific DGE (only keep a short text/explanation)
  • replace custom aggregate_and_filter() function with scanpy.get.aggregate() (preferred) or decoupler
  • use PyDESeq2 to replace the R code if possible (pertly.tools could also help)
  • include new figures with pertpy
  • add a small dropdown in case the reader only has one technical/biological replicate

Metadata

Metadata

Labels

enhancementNew feature or request

Type

No type

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions