conp-dataset/metadata/example/1KGP_DATS_chr2.json at master · thomasbeaudry/conp-dataset · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
{
	"version": "1.0",
	"privacy": "public open",
	"licenses": [
		{
			"name": "to be determined"
		}
	],
	"identifier": {
		"identifier": "1KGP_DATS_chr2"
	},
	"title":"Chromosome 2",
	"dates": [
		{
			"type": {
				"value":"source .vcf file creation date"
			},
			"date": "2015-02-18 00:00:00"
		}
	],
	"types": [
		{
			"information": {
				"value": "genomics"
			}
		}
	],
	"storedIn": {
		"name": "https://datahub-khvul4ng.udes.genap.ca/ALL.chr2.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf.gz",
		"description": "Gzipped .vcf file containing sequence variations"
	},
	"dimensions": [
		{
			"name": {
				"value": "Count of Single Nucleotide Polymorphism variants"
			},
			"values": [
				"6689892"
			]
		},
		{
			"name": {
				"value": "Count of single-nucleotide insertion and deletion events"
			},
			"values": [
				"254832"
			]
		}
	],
	"creators": [
		{
			"name": "1000 Genomes Project"
		}
	],
	"extraProperties": [
		{
			"category": "FTP link to gzipped FASTA file containing reference DNA sequence",
			"values": [
				{
					"value": "ftp://ftp.1000genomes.ebi.ac.uk//vol1/ftp/technical/reference/phase2_reference_assembly_sequence/hs37d5.fa.gz"
				}
			]
		}
	]
}