Merge branch 'master' into chore/apply_monthly_release_2026.02_to_midrcprod_staging.midrc.org_1771345370

Author: nss10

brhprod/brhstaging.data-commons.org/values/values.yaml

@@ -73,6 +73,8 @@ gen3-discovery-ai:
     tag: 1.1.0
 gen3-workflow:
   enabled: true
+  image:
+    tag: chore_add_helm_deployment_doc
   serviceAccount:
     annotations:
       eks.amazonaws.com/role-arn: "arn:aws:iam::885078588865:role/brhprod--brhstaging-helm--gen3-workflow"

ci/perf/values/fence.yaml

@@ -1,4 +1,7 @@
 fence:
+  resources:
+    requests:
+      cpu: "50m"
   # -- (map) External Secrets settings.
   externalSecrets:
     createK8sJwtKeysSecret: false

ci/perf/values/guppy.yaml

@@ -6,7 +6,7 @@ guppy:
   resources:
     requests:
       memory: "105Mi"
-      cpu: "15m"
+      cpu: "50m"
   enabled: true
   #TO DO Re-enable once ES index restore is added to modify values script
   dbRestore: false
@@ -30,5 +30,3 @@ guppy:
       type: imaging_study
   configIndex: ci_configs_alias
   authFilterField: auth_resource_path
-  autoscaling:
-    enabled: true

ci/perf/values/values.yaml

@@ -80,7 +80,7 @@ indexd:
   resources:
     requests:
       memory: "105Mi"
-      cpu: "15m"
+      cpu: "50m"
   # This will be dynamically replaced by env_setup.sh script.
   defaultPrefix: ""
   enabled: true
@@ -323,7 +323,7 @@ sheepdog:
   resources:
     requests:
       memory: "105Mi"
-      cpu: "15m"
+      cpu: "50m"
   enabled: true
   authNamespace: ''
   image:
@@ -339,7 +339,7 @@ peregrine:
   resources:
     requests:
       memory: "105Mi"
-      cpu: "15m"
+      cpu: "50m"
   enabled: true
   image:
     repository: "quay.io/cdis/peregrine"
@@ -408,7 +408,7 @@ arborist:
   resources:
     requests:
       memory: "105Mi"
-      cpu: "15m"
+      cpu: "50m"
   enabled: true
   image:
     repository: "quay.io/cdis/arborist"
@@ -438,7 +438,7 @@ revproxy:
     resources:
       requests:
         memory: "105Mi"
-        cpu: "15m"
+        cpu: "50m"
 
 
 wts:

healprod/healdata.org/values/values.yaml

@@ -213,7 +213,7 @@ hatchery:
             "target-port": 8888,
             "cpu-limit": "1.0",
             "memory-limit": "2Gi",
-            "name": "(Generic) Jupyter Lab Notebook with R Kernel",
+            "name": "JupyterLab with Python and R Kernels",
             "image": "quay.io/cdis/heal-notebooks:generic_rkernel__518649830a512a48eb4727ffa56d3a87b08d427c",
             "env": {
               "FRAME_ANCESTORS": "https://healdata.org"
@@ -248,7 +248,7 @@ hatchery:
             "target-port": 8888,
             "cpu-limit": "1.0",
             "memory-limit": "2Gi",
-            "name": "(Generic, User-licensed) Stata Notebook ",
+            "name": "JupyterLab with User-Licensed Stata",
             "image": "quay.io/cdis/jupyter-pystata-user-licensed:3.1.1",
             "env": {
               "FRAME_ANCESTORS": "https://healdata.org"
@@ -283,7 +283,7 @@ hatchery:
             "target-port": 8888,
             "cpu-limit": "1.0",
             "memory-limit": "2Gi",
-            "name": "(Generic, Limited Gen3-licensed) Stata Notebook",
+            "name": "JupyterLab with Shared Stata License",
             "image": "quay.io/cdis/jupyter-pystata-gen3-licensed:3.1.1",
             "env": {
               "FRAME_ANCESTORS": "https://healdata.org"
@@ -328,7 +328,7 @@ hatchery:
             "target-port": 8888,
             "cpu-limit": "1.0",
             "memory-limit": "2Gi",
-            "name": "(Tutorials) Example Analysis Jupyter Lab Notebooks",
+            "name": "Use JupyterLab with Example Analysis Notebooks",
             "image": "quay.io/cdis/heal-notebooks:combined_tutorials__efec6b81db6f08d1c94f610463951610410a96ce",
             "env": {
               "FRAME_ANCESTORS": "https://healdata.org"

healprod/preprod.healdata.org/values/values.yaml

@@ -1,7 +1,7 @@
 ambassador:
   jupyterNamespace: jupyter-pods-healpreprod
 arborist:
-  replicaCount: 4
+  replicaCount: 2
   autoscaling:
     enabled: false
     maxReplicas: 1
@@ -59,7 +59,7 @@ fence:
   serviceAccount:
     annotations:
       eks.amazonaws.com/role-arn: arn:aws:iam::205252583234:role/healprod--healpreprod-helm--audit-sqs-sender
-  replicaCount: 4
+  replicaCount: 2
   autoscaling:
     enabled: false
     maxReplicas: 1
@@ -155,11 +155,13 @@ global:
   revproxyArn: arn:aws:acm:us-east-1:205252583234:certificate/8bb3d424-be34-493c-a43b-e2c686c9dc6c
 hatchery:
   enabled: true
+  replicaCount: 3
   externalSecrets:
     stataG3auto: stata-workspace-gen3-license-preprod-heal
   image:
     repository: 707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery
-    tag: '2026.01'
+    # tag: '2026.01'
+    tag: 'fix_idempotent-cost-track'
   hatchery:
     json: |-
       {
@@ -170,11 +172,11 @@ hatchery:
         "user-namespace": "jupyter-pods-healpreprod",
         "sub-dir": "/lw-workspace",
         "user-volume-size": "10Gi",
-        "pay-models-dynamodb-table": "bmh-admin-portal-backend-bmhworkspacetableD4D73E43-1SZM8FA8IP6F",
+        "pay-models-dynamodb-table": "bmh-admin-portal-backend-bmhworkspacetableD4D73E43-1SZM8FA8IP6F-preprod",
         "default-pay-model": {
           "bmh_workspace_id": "blanket_billing_eks",
           "region": "us-east-1",
-          "account_id": "252835817747",
+          "local": true,
           "workspace_type": "healworkspaces",
           "hard-limit": 5,
           "soft-limit": 4
@@ -209,7 +211,7 @@ hatchery:
             "target-port": 8888,
             "cpu-limit": "1.0",
             "memory-limit": "2Gi",
-            "name": "(Generic) Jupyter Lab Notebook with R Kernel",
+            "name": "JupyterLab with Python and R Kernels",
             "image": "quay.io/cdis/heal-notebooks:generic_rkernel__518649830a512a48eb4727ffa56d3a87b08d427c",
             "env": {
               "FRAME_ANCESTORS": "https://preprod.healdata.org"
@@ -244,7 +246,7 @@ hatchery:
             "target-port": 8888,
             "cpu-limit": "1.0",
             "memory-limit": "2Gi",
-            "name": "(Generic, User-licensed) Stata Notebook ",
+            "name": "JupyterLab with User-Licensed Stata",
             "image": "quay.io/cdis/jupyter-pystata-user-licensed:3.1.1",
             "env": {
               "FRAME_ANCESTORS": "https://preprod.healdata.org"
@@ -278,7 +280,7 @@ hatchery:
             "target-port": 8888,
             "cpu-limit": "1.0",
             "memory-limit": "2Gi",
-            "name": "(Generic, Limited Gen3-licensed) Stata Notebook",
+            "name": "JupyterLab with Shared Stata License",
             "image": "quay.io/cdis/jupyter-pystata-gen3-licensed:3.1.1",
             "env": {
               "FRAME_ANCESTORS": "https://preprod.healdata.org"
@@ -323,7 +325,7 @@ hatchery:
             "target-port": 8888,
             "cpu-limit": "1.0",
             "memory-limit": "2Gi",
-            "name": "(Tutorials) Example Analysis Jupyter Lab Notebooks",
+            "name": "Use JupyterLab with Example Analysis Notebooks",
             "image": "quay.io/cdis/heal-notebooks:combined_tutorials__efec6b81db6f08d1c94f610463951610410a96ce",
             "env": {
               "FRAME_ANCESTORS": "https://preprod.healdata.org"

midrcprod/staging.midrc.org/values/portal/gitops.json

@@ -235,10 +235,10 @@
         "navigation": {
             "items": [
                 {
-                    "name": "Discovery",
+                    "name": "Datasets",
                     "link": "/discovery",
                     "icon": "query",
-                    "tooltip": "Dataset discovery"
+                    "tooltip": "The Datasets page provides free-text and tag-based search over published datasets in MIDRC along with links to publications and data download buttons."
                 },
                 {
                     "name": "Exploration",

vadcprod/vpodc.data-commons.org/values/values.yaml

@@ -162,7 +162,7 @@ guppy:
   esEndpoint: http://elasticsearch:9200
   image:
     repository: 707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/guppy
-    tag: '2025.12'
+    tag: '2026.02'
   indices:
     - index: etl_mickey
       type: patients