diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index 3c787408..5a74f4a0 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -18,6 +18,6 @@ jobs: name: Python Unit Test with Postgres uses: uc-cdis/.github/.github/workflows/python_unit_test.yaml@master with: - python-version: '3.9' + python-version: '3.13' test-script: 'tests/ci_commands_script.sh' run-coveralls: true diff --git a/Dockerfile b/Dockerfile index 6f9c86d9..1f0b09aa 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,7 +1,7 @@ -ARG AZLINUX_BASE_VERSION=master +ARG AZLINUX_BASE_VERSION=3.13-pythonnginx # Base stage with python-build-base -FROM quay.io/cdis/python-nginx-al:${AZLINUX_BASE_VERSION} AS base +FROM quay.io/cdis/amazonlinux-base:${AZLINUX_BASE_VERSION} AS base ENV appname=indexd @@ -12,32 +12,36 @@ RUN chown -R gen3:gen3 /${appname} # Builder stage FROM base AS builder +USER root +RUN chown -R gen3:gen3 /venv + USER gen3 -# copy ONLY poetry artifact, install the dependencies but not the app; -# this will make sure that the dependencies are cached COPY poetry.lock pyproject.toml /${appname}/ -RUN poetry install -vv --no-root --only main --no-interaction + +# RUN python3 -m venv /env && . /env/bin/activate && +RUN poetry install -vv --no-interaction --without dev COPY --chown=gen3:gen3 . /${appname} -COPY --chown=gen3:gen3 ./deployment/wsgi/wsgi.py /${appname}/wsgi.py -# install the app -RUN poetry install --without dev --no-interaction +RUN poetry install -vv --no-interaction --without dev RUN git config --global --add safe.directory ${appname} && COMMIT=`git rev-parse HEAD` && echo "COMMIT=\"${COMMIT}\"" > ${appname}/version_data.py \ && VERSION=`git describe --always --tags` && echo "VERSION=\"${VERSION}\"" >> ${appname}/version_data.py + # Final stage FROM base COPY --from=builder /${appname} /${appname} - -RUN dnf -y install vim +COPY --from=builder /venv /venv +ENV PATH="/usr/sbin:$PATH" +USER root +RUN mkdir -p /var/log/nginx +RUN chown -R gen3:gen3 /var/log/nginx # Switch to non-root user 'gen3' for the serving process -USER gen3 -WORKDIR /${appname} +USER gen3 -CMD ["/bin/bash", "-c", "/indexd/dockerrun.bash"] +CMD ["/bin/bash", "-c", "/${appname}/dockerrun.bash"] diff --git a/bin/indexd_settings.py b/bin/indexd_settings.py index ce0b7476..2f3dd6d3 100644 --- a/bin/indexd_settings.py +++ b/bin/indexd_settings.py @@ -1,6 +1,6 @@ from os import environ import json -import config_helper +import indexd.config_helper as config_helper from indexd.index.drivers.alchemy import SQLAlchemyIndexDriver from indexd.alias.drivers.alchemy import SQLAlchemyAliasDriver from indexd.auth.drivers.alchemy import SQLAlchemyAuthDriver diff --git a/bin/migrate_to_single_table.py b/bin/migrate_to_single_table.py index 86b2ced5..59c4eec8 100644 --- a/bin/migrate_to_single_table.py +++ b/bin/migrate_to_single_table.py @@ -4,7 +4,7 @@ import argparse import backoff import json -import bin.config_helper as config_helper +import indexd.config_helper as config_helper from cdislogging import get_logger from sqlalchemy import create_engine from sqlalchemy.ext.declarative import declarative_base diff --git a/bin/config_helper.py b/indexd/config_helper.py similarity index 100% rename from bin/config_helper.py rename to indexd/config_helper.py diff --git a/poetry.lock b/poetry.lock index 89d24996..37bae144 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,20 +1,20 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand. 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