do not replace nulls with 'NA'

tedil · Oliver Stolpe · commit ee957379e088 · 2025-03-11T15:03:38.000+01:00
diff --git a/rules/work/genes/scripts/gnomad_constraints_v4_to_tsv.py b/rules/work/genes/scripts/gnomad_constraints_v4_to_tsv.py
@@ -57,7 +57,6 @@ def main(
         .with_columns(pl.lit(None).alias(col) for col in additional_columns)
         .join(ensembl_xlink, on=["ensembl_transcript_id"])
         .select(columns_dst)
-        .fill_null("NA")
     )
     df.write_csv(output_tsv_path, separator="\t")
     shell(f"md5sum {output_tsv_path} > {output_tsv_md5_path}")

Original file line number	Diff line number	Diff line change
`@@ -57,7 +57,6 @@ def main(`
`57`	`57`	`.with_columns(pl.lit(None).alias(col) for col in additional_columns)`
`58`	`58`	`.join(ensembl_xlink, on=["ensembl_transcript_id"])`
`59`	`59`	`.select(columns_dst)`
`60`		`- .fill_null("NA")`
`61`	`60`	`)`
`62`	`61`	`df.write_csv(output_tsv_path, separator="\t")`
`63`	`62`	`shell(f"md5sum {output_tsv_path} > {output_tsv_md5_path}")`