@@ -265,27 +265,30 @@ varfish-server-worker db to-bin \
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To obtain ClinVar
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` ` ` bash session
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- wget -O /tmp/annonars-clinvar-minimal-grch37-20230910 +0.18.0 .tar.gz \
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- https://github.com/bihealth/annonars-data-clinvar/releases/download/clinvar-weekly-20230910 /annonars-clinvar-minimal-grch37-20230910 +0.18.0 .tar.gz
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- wget -O /tmp/annonars-clinvar-minimal-grch38-20230910 +0.18.0 .tar.gz \
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- https://github.com/bihealth/annonars-data-clinvar/releases/download/clinvar-weekly-20230910 /annonars-clinvar-minimal-grch38-20230910 +0.18.0 .tar.gz
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+ wget -O /tmp/annonars-clinvar-minimal-grch37-20231015 +0.24.1 .tar.gz \
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+ https://github.com/bihealth/annonars-data-clinvar/releases/download/annonars-data-clinvar-20231015 /annonars-clinvar-minimal-grch37-20231015 +0.24.1 .tar.gz
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+ wget -O /tmp/annonars-clinvar-minimal-grch38-20231015 +0.24.1 .tar.gz \
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+ https://github.com/bihealth/annonars-data-clinvar/releases/download/annonars-data-clinvar-20231015 /annonars-clinvar-minimal-grch38-20231015 +0.24.1 .tar.gz
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- tar --strip-components=2 - C .dev/volumes/varfish-static/data/download/annonars/ \
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- -xf /tmp/annonars-clinvar-minimal-grch37-20230910 +0.18.0 .tar.gz
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- tar --strip-components=2 - C .dev/volumes/varfish-static/data/download/annonars \
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- -xf /tmp/annonars-clinvar-minimal-grch38-20230910 +0.18.0 .tar.gz
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+ tar -C .dev/volumes/varfish-static/data/download/annonars/ \
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+ -tf /tmp/annonars-clinvar-minimal-grch37-20231015 +0.24.1 .tar.gz
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+ tar -C .dev/volumes/varfish-static/data/download/annonars \
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+ -xf /tmp/annonars-clinvar-minimal-grch38-20231015 +0.24.1 .tar.gz
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- ln -sr .dev/volumes/varfish-static/data/download/annonars/annonars-clinvar-minimal-grch37-20230910+0.18.0 \
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+ rm -f .dev/volumes/varfish-static/data/annonars/grch37/clinvar
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+ ln -sr .dev/volumes/varfish-static/data/download/annonars/annonars-clinvar-minimal-grch37-20231015+0.24.1 \
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.dev/volumes/varfish-static/data/annonars/grch37/clinvar
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- ln -sr .dev/volumes/varfish-static/data/download/annonars/annonars-clinvar-minimal-grch38-20230910+0.18.0 \
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+ rm -f .dev/volumes/varfish-static/data/annonars/grch38/clinvar
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+ ln -sr .dev/volumes/varfish-static/data/download/annonars/annonars-clinvar-minimal-grch38-20231015+0.24.1 \
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.dev/volumes/varfish-static/data/annonars/grch38/clinvar
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- wget -O /tmp/annonars-clinvar-genes-20230910 +0.18.0 .tar.gz \
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- https://github.com/bihealth/annonars-data-clinvar/releases/download/clinvar-weekly-20230910 /annonars-clinvar-genes-20230910 +0.18.0 .tar.gz
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+ wget -O /tmp/annonars-clinvar-genes-20231015 +0.24.1 .tar.gz \
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+ https://github.com/bihealth/annonars-data-clinvar/releases/download/annonars-data-clinvar-20231015 /annonars-clinvar-genes-20231015 +0.24.1 .tar.gz
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tar -C .dev/volumes/varfish-static/data/download/annonars \
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- -xf /tmp/annonars-clinvar-genes-20230910 +0.18.0 .tar.gz
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+ -xf /tmp/annonars-clinvar-genes-20231015 +0.24.1 .tar.gz
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- ln -sr .dev/volumes/varfish-static/data/download/annonars/annonars-clinvar-genes-20230910+0.18.0 \
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+ rm -f .dev/volumes/varfish-static/data/annonars/clinvar-genes
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+ ln -sr .dev/volumes/varfish-static/data/download/annonars/annonars-clinvar-genes-20231015+0.24.1 \
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.dev/volumes/varfish-static/data/annonars/clinvar-genes
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` ` `
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