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Copy pathsequence.gb
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265 lines (260 loc) · 13.4 KB
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LOCUS JF917085 502 bp DNA linear VRL 25-JUL-2016
DEFINITION Blueberry red ringspot virus isolate UF1586 putative translational
transactivator gene, partial cds.
ACCESSION JF917085
VERSION JF917085.1
KEYWORDS .
SOURCE Blueberry red ringspot virus
ORGANISM Blueberry red ringspot virus
Viruses; Retro-transcribing viruses; Caulimoviridae; Soymovirus.
REFERENCE 1 (bases 1 to 502)
AUTHORS Harmon,P.F., Harmon,C.L., Vitoreli,A.M., Liberti,D. and Wright,A.F.
TITLE First report of Blueberry red ringspot virus on southern highbush
blueberry in Florida
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 502)
AUTHORS Harmon,P.F., Harmon,C.L., Vitoreli,A.M., Liberti,D. and Wright,A.F.
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2011) Plant Pathology, University of Florida,
1453 Fifield Hall Hull Rd, Gainesville, FL 32611, USA
FEATURES Location/Qualifiers
source 1..502
/organism="Blueberry red ringspot virus"
/proviral
/mol_type="genomic DNA"
/isolate="UF1586"
/host="southern highbush blueberry (interspecific
Vaccinium hybrid) cultivar Star"
/db_xref="taxon:172220"
/country="USA"
/collection_date="2010"
/PCR_primers="fwd_name: rrsv3, fwd_seq:
atcagtcccagaagaaaagaagta, rev_name: rrsv4, rev_seq:
tccgaaaaatagatagtgtcagc"
CDS <1..>502
/codon_start=2
/product="putative translational transactivator"
/protein_id="AEQ19303.1"
/translation="SVLANIEEVNKQVAAAKSKKEYYVIFNGPMKGIYDEWHKAAPHI
QGQSSIIHKKYPNIDEAKKALGGSYAAITNAPASPRDTKVLLGRFKVPSAPTIDSIQT
IESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASALTTY
ELFKNGL"
ORIGIN
1 ttcagttcta gccaacattg aagaagtcaa caaacaagtt gcagcagcca aaagcaagaa
61 ggaatattat gtcattttta atggacccat gaaaggaatc tatgacgaat ggcataaagc
121 agcaccacat attcaaggac aatccagcat cattcacaag aaatatccaa acattgacga
181 agcaaaaaag gctcttggag gaagctatgc agcaatcact aatgcaccag catcacccag
241 agatacaaaa gtattattgg gaagatttaa agtcccttca gcaccaacaa ttgattcaat
301 ccaaactatt gagtcaaaaa tgaaagcatt aaaagttact cagaagaaat ataatgatta
361 tatggagatc ctctacaact acaaggatca acataaatta ttacatttct accctaagta
421 ccgagataca attggataca aagcaataat cttgcccgaa gcatcagcat taaccactta
481 tgaattgttc aaaaatggat ta
//
LOCUS JF917084 502 bp DNA linear VRL 25-JUL-2016
DEFINITION Blueberry red ringspot virus isolate UF1584 putative translational
transactivator gene, partial cds.
ACCESSION JF917084
VERSION JF917084.1
KEYWORDS .
SOURCE Blueberry red ringspot virus
ORGANISM Blueberry red ringspot virus
Viruses; Retro-transcribing viruses; Caulimoviridae; Soymovirus.
REFERENCE 1 (bases 1 to 502)
AUTHORS Harmon,P.F., Harmon,C.L., Vitoreli,A.M., Liberti,D. and Wright,A.F.
TITLE First report of Blueberry red ringspot virus on southern highbush
blueberry in Florida
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 502)
AUTHORS Harmon,P.F., Harmon,C.L., Vitoreli,A.M., Liberti,D. and Wright,A.F.
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2011) Plant Pathology, University of Florida,
1453 Fifield Hall Hull Rd, Gainesville, FL 32611, USA
FEATURES Location/Qualifiers
source 1..502
/organism="Blueberry red ringspot virus"
/proviral
/mol_type="genomic DNA"
/isolate="UF1584"
/host="southern highbush blueberry (interspecific
Vaccinium hybrid) cultivar Star"
/db_xref="taxon:172220"
/country="USA"
/collection_date="2010"
/PCR_primers="fwd_name: rrsv3, fwd_seq:
atcagtcccagaagaaaagaagta, rev_name: rrsv4, rev_seq:
tccgaaaaatagatagtgtcagc"
CDS <1..>502
/codon_start=2
/product="putative translational transactivator"
/protein_id="AEQ19302.1"
/translation="SVLANIEEVNKQVAAAKSKKEYYVIFNGPMKGIYDEWYKAAPHI
QGQSSIIHKKYPNIDEAKKALGGSYAAITNAPASPRDTKVLLGRFKVPSAPTIDSIQT
IESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASALTTY
ELFKNGL"
ORIGIN
1 ttcagttcta gccaacattg aagaagtcaa caaacaagtt gcagcagcca aaagcaagaa
61 ggaatattat gtcattttta atggacccat gaaagggatc tatgacgaat ggtataaagc
121 agcaccacat attcaaggac aatccagcat cattcacaag aaatatccaa acattgacga
181 agcaaaaaag gctcttggag gaagctatgc agcaatcact aatgcaccag catcacccag
241 agatacaaaa gtattattgg gaagatttaa agtcccttca gcaccaacaa ttgattcaat
301 ccaaactatt gagtcaaaaa tgaaagcatt aaaagttact cagaagaaat ataatgatta
361 tatggagatc ctctacaact acaaggatca acataaatta ttacatttct accctaagta
421 ccgagataca attggataca aagcaataat cttgcccgaa gcatcagcat taaccactta
481 tgaattgttc aaaaatggat ta
//
LOCUS JF917083 502 bp DNA linear VRL 25-JUL-2016
DEFINITION Blueberry red ringspot virus isolate UF1583 putative translational
transactivator gene, partial cds.
ACCESSION JF917083
VERSION JF917083.1
KEYWORDS .
SOURCE Blueberry red ringspot virus
ORGANISM Blueberry red ringspot virus
Viruses; Retro-transcribing viruses; Caulimoviridae; Soymovirus.
REFERENCE 1 (bases 1 to 502)
AUTHORS Harmon,P.F., Harmon,C.L., Vitoreli,A.M., Liberti,D. and Wright,A.F.
TITLE First report of Blueberry red ringspot virus on southern highbush
blueberry in Florida
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 502)
AUTHORS Harmon,P.F., Harmon,C.L., Vitoreli,A.M., Liberti,D. and Wright,A.F.
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2011) Plant Pathology, University of Florida,
1453 Fifield Hall Hull Rd, Gainesville, FL 32611, USA
FEATURES Location/Qualifiers
source 1..502
/organism="Blueberry red ringspot virus"
/proviral
/mol_type="genomic DNA"
/isolate="UF1583"
/host="southern highbush blueberry (interspecific
Vaccinium hybrid) cultivar Scintilla"
/db_xref="taxon:172220"
/country="USA"
/collection_date="2010"
/PCR_primers="fwd_name: rrsv3, fwd_seq:
atcagtcccagaagaaaagaagta, rev_name: rrsv4, rev_seq:
tccgaaaaatagatagtgtcagc"
CDS <1..>502
/codon_start=2
/product="putative translational transactivator"
/protein_id="AEQ19301.1"
/translation="SVLANIEEVNKQVAAAKSKKEYYVIFNGPMKGIYDEWHKAAPHI
QGQSSIIHKKYPNIDEAKKALGGSYAAITNAPASPRDTKVLLGRFKVPSAPTIDSIQT
IESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASALTTY
ELFKNGL"
ORIGIN
1 ttcagttcta gccaacattg aagaagtcaa taaacaagtt gcagcagcca aaagcaagaa
61 ggaatattat gtcattttta atggacccat gaaagggatc tatgacgaat ggcataaagc
121 agcaccacat attcaaggac aatccagcat cattcacaag aaatatccaa acattgacga
181 agcaaaaaag gctcttggag gaagctatgc agcaatcact aatgcaccag catcacccag
241 agatacaaaa gtattattgg gaagatttaa agtcccttca gcaccaacaa ttgattcaat
301 ccaaactatt gagtcaaaaa tgaaagcatt aaaagttact cagaagaaat ataatgatta
361 tatggagatc ctctacaact acaaggatca acataaatta ttacatttct accctaagta
421 ccgagataca attggataca aagcaataat cttgcccgaa gcatcagcat taaccactta
481 tgaattgttc aaaaatggat ta
//
LOCUS JF917082 502 bp DNA linear VRL 25-JUL-2016
DEFINITION Blueberry red ringspot virus isolate UF1585 putative translational
transactivator gene, partial cds.
ACCESSION JF917082
VERSION JF917082.1
KEYWORDS .
SOURCE Blueberry red ringspot virus
ORGANISM Blueberry red ringspot virus
Viruses; Retro-transcribing viruses; Caulimoviridae; Soymovirus.
REFERENCE 1 (bases 1 to 502)
AUTHORS Harmon,P.F., Harmon,C.L., Vitoreli,A.M., Liberti,D. and Wright,A.F.
TITLE First report of Blueberry red ringspot virus on southern highbush
blueberry in Florida
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 502)
AUTHORS Harmon,P.F., Harmon,C.L., Vitoreli,A.M., Liberti,D. and Wright,A.F.
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2011) Plant Pathology, University of Florida,
1453 Fifield Hall Hull Rd, Gainesville, FL 32611, USA
FEATURES Location/Qualifiers
source 1..502
/organism="Blueberry red ringspot virus"
/proviral
/mol_type="genomic DNA"
/isolate="UF1585"
/host="southern highbush blueberry (interspecific
Vaccinium hybrid) cultivar Star"
/db_xref="taxon:172220"
/country="USA"
/collection_date="2010"
/PCR_primers="fwd_name: rrsv3, fwd_seq:
atcagtcccagaagaaaagaagta, rev_name: rrsv4, rev_seq:
tccgaaaaatagatagtgtcagc"
CDS <1..>502
/codon_start=2
/product="putative translational transactivator"
/protein_id="AEQ19300.1"
/translation="SVLANIEEVNKQIAAAKSKKEYYVIFNGPMKGIYDEWHKAAPHI
QGQSSIIHKKYPNIDEAKKALGGSYAAITNAPASPRDTKVLLGRFKVPSAPTIDSIQT
IESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASALTTY
ELFKNGL"
ORIGIN
1 ttcagttcta gccaacattg aagaagtcaa caaacaaatt gcagcagcca aaagcaagaa
61 ggaatattat gtcattttta atggacccat gaaagggatc tatgacgaat ggcataaagc
121 agcaccacat attcaaggac aatccagcat cattcacaag aaatatccaa acattgacga
181 agcaaaaaag gctcttggag gaagctatgc agcaatcact aatgcaccag catcacccag
241 agatacaaaa gtattattgg gaagatttaa agtcccttca gcaccaacaa ttgattcaat
301 ccaaactatt gagtcaaaaa tgaaagcatt aaaagttact cagaagaaat ataatgatta
361 tatggagatc ctctacaact acaaggatca acataaatta ttacatttct accctaagta
421 ccgagataca attggataca aagcaataat cttgcccgaa gcatcagcat taaccactta
481 tgaattgttc aaaaatggat ta
//
LOCUS JF917081 502 bp DNA linear VRL 25-JUL-2016
DEFINITION Blueberry red ringspot virus isolate UF1587 putative translational
transactivator gene, partial cds.
ACCESSION JF917081
VERSION JF917081.1
KEYWORDS .
SOURCE Blueberry red ringspot virus
ORGANISM Blueberry red ringspot virus
Viruses; Retro-transcribing viruses; Caulimoviridae; Soymovirus.
REFERENCE 1 (bases 1 to 502)
AUTHORS Harmon,P.F., Harmon,C.L., Vitoreli,A.M., Liberti,D. and Wright,A.F.
TITLE First report of Blueberry red ringspot virus on southern highbush
blueberry in Florida
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 502)
AUTHORS Harmon,P.F., Harmon,C.L., Vitoreli,A.M., Liberti,D. and Wright,A.F.
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2011) Plant Pathology, University of Florida,
1453 Fifield Hall Hull Rd, Gainesville, FL 32611, USA
FEATURES Location/Qualifiers
source 1..502
/organism="Blueberry red ringspot virus"
/proviral
/mol_type="genomic DNA"
/isolate="UF1587"
/host="southern highbush blueberry (interspecific
Vaccinium hybrid) cultivar Star"
/db_xref="taxon:172220"
/country="USA"
/collection_date="2010"
/PCR_primers="fwd_name: rrsv3, fwd_seq:
atcagtcccagaagaaaagaagta, rev_name: rrsv4, rev_seq:
tccgaaaaatagatagtgtcagc"
CDS <1..>502
/codon_start=2
/product="putative translational transactivator"
/protein_id="AEQ19299.1"
/translation="SVLANIEEVNKQIAAAKSKKEYYVIFNGPMKGIYDEWHKAAPHI
QGQSSIIHKKYPNIDEAKKALGGSYAAITNAPASPRDTKVLLGRFKVPSAPTIDSIQT
IESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASALTTY
ELFKNGL"
ORIGIN
1 ttcagttcta gccaacattg aagaagtcaa caaacaaatt gcagcagcca aaagcaagaa
61 ggaatattat gtcattttta atggacccat gaaagggatc tatgacgaat ggcataaagc
121 agcaccacat attcaaggac aatccagcat cattcacaag aaatatccaa acattgacga
181 agcaaaaaag gctcttggag gaagctatgc agcaatcact aatgcaccag catcacccag
241 agatacaaaa gtattattgg gaagatttaa agtcccttca gcaccaacaa ttgattcaat
301 ccaaactatt gagtcaaaaa tgaaagcatt aaaagttact cagaagaagt ataatgatta
361 tatggagatc ctctacaact acaaggatca acataaatta ttacatttct accctaagta
421 ccgagataca attggataca aagcaataat cttgcccgaa gcatcagcat taaccaccta
481 tgaattgttc aaaaatggat ta
//