latest dbplyr 2.5.0

[z5ouyang]

Describe the bug
Recently installed the 'curatedMetagenomicDataAnalyses' with the latest dbplyr latest 2.5.0. The example code does not working.

To Reproduce
curatedMetagenomicData("AsnicarF_20.+.relative_abundance", dryrun = FALSE, counts = TRUE)
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'query': Failed to collect lazy table.
Caused by error in db_collect():
! Arguments in ... must be used.
✖ Problematic argument:
• ..1 = Inf
ℹ Did you misspell an argument name?

Expected behavior
No errors when using the example code

Additional context
After downgrade to dbplyr=2.3.4, it works again. Maybe put a upper version limits to dbplyr?

[cmirzayi]

Hi @z5ouyang.

Thank you for your bug report! It looks like this issue is related to a previous version of BiocFileCache and was fixed in the 3.18 release of Bioconductor according to the pull request resolving the issue here: Bioconductor/BiocFileCache#50. Please ensure that you have updated to at least Bioconductor 3.18 and have updated BiocFileCache.

If the bug continues, please let us know and please include your sessionInfo().

[z5ouyang]

Thanks for your suggestions. But bioconductor 3.18 require R4.3. But our system only has R4.2* currently. If this is the requirement, it would be great it can be state somewhere. As the OP said that if the version of packages (R or dbplyr) could be specified in "DESCRIPTION".

Thanks again.