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‎.dask/config.yaml‎

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distributed:
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logging:
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bokeh: critical
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dashboard:
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link: /user/{JUPYTERHUB_USER}/proxy/{port}/status
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admin:
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tick:
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limit: 5s
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kubernetes:
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worker-name: dask-{JUPYTERHUB_USER}-{uuid}
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worker-template:
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metadata:
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spec:
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restartPolicy: Never
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containers:
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- args:
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- dask-worker
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- --nthreads
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- '2'
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- --no-bokeh
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- --memory-limit
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- 7GB
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- --death-timeout
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- '60'
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image: ${JUPYTER_IMAGE_SPEC}
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name: dask-worker
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resources:
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limits:
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cpu: "1.75"
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memory: 7G
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requests:
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cpu: "1.75"
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memory: 7G

‎.github/workflows/main.yml‎

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name: CI
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on:
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push:
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branches: [ master ]
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pull_request:
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branches: [ master ]
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workflow_dispatch:
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jobs:
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build_0:
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name: wradlib notebooks - linux
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runs-on: ubuntu-latest
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defaults:
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run:
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shell: bash -l {0}
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env:
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WRADLIB_DATA: ./wradlib-data
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strategy:
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fail-fast: false
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matrix:
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python-version: ["3.9"]
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steps:
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- name: Cancel Previous Runs
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uses: styfle/[email protected]
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with:
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access_token: ${{ github.token }}
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- uses: actions/checkout@v2
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with:
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fetch-depth: 0
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- name: install micromamba
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run: |
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wget -qO- https://micromamba.snakepit.net/api/micromamba/linux-64/latest | tar -xvj bin/micromamba --strip-components=1
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mv "$HOME/.bashrc" .bashrcBAK
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touch "$HOME/.bashrc"
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./micromamba shell init -s bash -p ~/micromamba
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cat "$HOME/.bashrc" >> "$HOME/.bash_profile"
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mv .bashrcBAK "$HOME/.bashrc"
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- name: Install deps
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run: |
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micromamba create -y -n wradlib-tests python=${{ matrix.python-version }} -f ci/requirements/notebooks.txt --channel conda-forge
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echo "set -eo pipefail" >> "$HOME/.bash_profile"
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echo "micromamba activate wradlib-tests" >> "$HOME/.bash_profile"
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- name: Install wradlib
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run: |
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git clone https://github.com/wradlib/wradlib.git
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cd wradlib
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echo "WRADLIB_TAG=`git name-rev --name-only --tags HEAD`" >> $GITHUB_ENV
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python setup.py sdist
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python -m pip install . --no-deps
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- name: Clone wradlib-data
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run: |
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git clone https://github.com/wradlib/wradlib-data.git
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- name: Version Info
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run: |
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micromamba list
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python -c "import wradlib; print(wradlib.version.full_version)"
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python -c "import wradlib; print(wradlib.show_versions())"
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- name: Render with pytest
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env:
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WRADLIB_EARTHDATA_USER: ${{ secrets.WRADLIB_EARTHDATA_USER }}
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WRADLIB_EARTHDATA_PASS: ${{ secrets.WRADLIB_EARTHDATA_PASS }}
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run: |
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export WRADLIB_DATA=`realpath $WRADLIB_DATA`
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pytest -n auto --verbose --durations=15 --pyargs notebooks
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- name: Commit files
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if: github.event_name == 'push' || github.event_name == 'workflow_dispatch'
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run: |
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git config --global user.email "[email protected]"
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git config --global user.name "wradlib-docs-bot"
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git checkout --orphan render
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git add --all .
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git commit -m "Rendering at commit $GITHUB_SHA"
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- name: Push changes
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if: github.event_name == 'push' || github.event_name == 'workflow_dispatch'
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run: |
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if [ $WRADLIB_TAG == 'undefined' ]; then
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BRANCH=devel
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else
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BRANCH=$WRADLIB_TAG
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fi
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git push https://${{ secrets.GITHUB_TOKEN }}@github.com/wradlib/wradlib-notebooks.git render:$BRANCH -fq
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build_1:
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name: wradlib notebooks - macosx
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runs-on: macos-latest
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defaults:
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run:
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shell: bash -l {0}
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env:
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WRADLIB_DATA: ./wradlib-data
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strategy:
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fail-fast: false
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matrix:
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python-version: ["3.9"]
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steps:
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- name: Cancel Previous Runs
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uses: styfle/[email protected]
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with:
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access_token: ${{ github.token }}
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- uses: actions/checkout@v2
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with:
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fetch-depth: 0
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- name: install micromamba
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run: |
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curl -Ls https://micromamba.snakepit.net/api/micromamba/osx-64/latest | tar -xvj bin/micromamba
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mv bin/micromamba .
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mv "$HOME/.bashrc" .bashrcBAK
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touch "$HOME/.bashrc"
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./micromamba shell init -s bash -p ~/micromamba
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cat "$HOME/.bashrc" >> "$HOME/.bash_profile"
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mv .bashrcBAK "$HOME/.bashrc"
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- name: Install deps
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run: |
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micromamba create -y -n wradlib-tests python=${{ matrix.python-version }} -f ci/requirements/notebooks.txt --channel conda-forge
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echo "set -eo pipefail" >> "$HOME/.bash_profile"
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echo "micromamba activate wradlib-tests" >> "$HOME/.bash_profile"
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- name: Install wradlib
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run: |
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git clone https://github.com/wradlib/wradlib.git
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cd wradlib
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echo "WRADLIB_TAG=`git name-rev --name-only --tags HEAD`" >> $GITHUB_ENV
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python setup.py sdist
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python -m pip install . --no-deps
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- name: Clone wradlib-data
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run: |
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git clone https://github.com/wradlib/wradlib-data.git
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- name: Version Info
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run: |
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micromamba list
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python -c "import wradlib; print(wradlib.version.full_version)"
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python -c "import wradlib; print(wradlib.show_versions())"
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- name: Render with pytest
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env:
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WRADLIB_EARTHDATA_USER: ${{ secrets.WRADLIB_EARTHDATA_USER }}
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WRADLIB_EARTHDATA_PASS: ${{ secrets.WRADLIB_EARTHDATA_PASS }}
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run: |
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export WRADLIB_DATA=`python -c "import os, sys; print(os.path.realpath(sys.argv[1]))" $WRADLIB_DATA`
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pytest -n auto --verbose --doctest-modules --durations=15 --cov-report xml:coverage.xml --cov=wradlib --pyargs notebooks
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build_2:
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name: wradlib notebooks - windows
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runs-on: windows-latest
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defaults:
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run:
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shell: bash
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env:
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WRADLIB_DATA: ./wradlib-data
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strategy:
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fail-fast: false
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matrix:
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python-version: ["3.9"]
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steps:
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- name: Cancel Previous Runs
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uses: styfle/[email protected]
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with:
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access_token: ${{ github.token }}
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- uses: actions/checkout@v2
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with:
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fetch-depth: 0
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- name: install micromamba
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run: |
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Invoke-Webrequest -URI https://micromamba.snakepit.net/api/micromamba/win-64/latest -OutFile micromamba.tar.bz2
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C:\PROGRA~1\7-Zip\7z.exe x micromamba.tar.bz2 -aoa
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C:\PROGRA~1\7-Zip\7z.exe x micromamba.tar -ttar -aoa -r Library\bin\micromamba.exe
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MOVE -Force Library\bin\micromamba.exe micromamba.exe
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.\micromamba.exe shell init -s powershell -p $HOME/micromamba
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shell: powershell
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- name: Install deps
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run: |
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$Env:MAMBA_ROOT_PREFIX=(Join-Path -Path $HOME -ChildPath micromamba)
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$Env:MAMBA_EXE=(Join-Path -Path (Get-Location) -ChildPath micromamba.exe)
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.\micromamba.exe create -y -n wradlib-tests python=${{ matrix.python-version }} -f ci/requirements/notebooks.txt --channel conda-forge
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shell: powershell
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- name: Install wradlib
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run: |
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eval "$(./micromamba shell hook -s bash)"
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git clone https://github.com/wradlib/wradlib.git
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cd wradlib
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echo "WRADLIB_TAG=`git name-rev --name-only --tags HEAD`" >> $GITHUB_ENV
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micromamba activate wradlib-tests
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python setup.py sdist
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python -m pip install . --no-deps
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- name: Clone wradlib-data
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run: |
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git clone https://github.com/wradlib/wradlib-data.git
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- name: Version Info
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run: |
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eval "$(./micromamba shell hook -s bash)"
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micromamba activate wradlib-tests
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micromamba list
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python -c "import wradlib; print(wradlib.version.full_version)"
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python -c "import wradlib; print(wradlib.show_versions())"
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- name: Test with pytest
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env:
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WRADLIB_EARTHDATA_USER: ${{ secrets.WRADLIB_EARTHDATA_USER }}
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WRADLIB_EARTHDATA_PASS: ${{ secrets.WRADLIB_EARTHDATA_PASS }}
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run: |
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eval "$(./micromamba shell hook -s bash)"
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micromamba activate wradlib-tests
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export WRADLIB_DATA=`python -c "import os, sys; print(os.path.realpath(sys.argv[1]))" $WRADLIB_DATA`
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pytest -n auto --verbose --doctest-modules --durations=15 --cov-report xml:coverage.xml --cov=wradlib --pyargs notebooks
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trigger_rtd:
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if: github.event_name == 'push' || github.event_name == 'workflow_dispatch'
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needs: [build_0]
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name: trigger readthedocs
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runs-on: ubuntu-latest
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defaults:
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run:
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shell: bash -l {0}
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env:
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RTD_TOKEN: ${{ secrets.RTD_TOKEN }}
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RTD_URL: ${{ secrets.RTD_URL }}
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steps:
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- name: trigger readthedocs
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run: |
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curl -X POST -d "token=$RTD_TOKEN" "$RTD_URL"

‎.github/workflows/render_notebooks.yml‎

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name: Render
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on:
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workflow_dispatch:
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jobs:
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build_0:
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name: wradlib notebooks - linux
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runs-on: ubuntu-latest
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defaults:
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run:
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shell: bash -l {0}
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env:
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WRADLIB_DATA: ./wradlib-data
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strategy:
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fail-fast: false
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matrix:
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python-version: ["3.9"]
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steps:
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- name: Cancel Previous Runs
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uses: styfle/[email protected]
23+
with:
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access_token: ${{ github.token }}
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- uses: actions/checkout@v2
26+
with:
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fetch-depth: 0
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- name: install micromamba
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run: |
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wget -qO- https://micromamba.snakepit.net/api/micromamba/linux-64/latest | tar -xvj bin/micromamba --strip-components=1
31+
mv "$HOME/.bashrc" .bashrcBAK
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touch "$HOME/.bashrc"
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./micromamba shell init -s bash -p ~/micromamba
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cat "$HOME/.bashrc" >> "$HOME/.bash_profile"
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mv .bashrcBAK "$HOME/.bashrc"
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- name: Install deps
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run: |
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micromamba create -y -n wradlib-tests python=${{ matrix.python-version }} -f ci/requirements/notebooks.txt --channel conda-forge
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echo "set -eo pipefail" >> "$HOME/.bash_profile"
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echo "micromamba activate wradlib-tests" >> "$HOME/.bash_profile"
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- name: Install wradlib
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run: |
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git clone https://github.com/wradlib/wradlib.git
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cd wradlib
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echo "WRADLIB_TAG=`git name-rev --name-only --tags HEAD`" >> $GITHUB_ENV
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python setup.py sdist
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python -m pip install . --no-deps
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- name: Clone wradlib-data
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run: |
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git clone https://github.com/wradlib/wradlib-data.git
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- name: Version Info
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run: |
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micromamba list
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python -c "import wradlib; print(wradlib.version.full_version)"
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python -c "import wradlib; print(wradlib.show_versions())"
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- name: Render with pytest
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env:
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WRADLIB_EARTHDATA_USER: ${{ secrets.WRADLIB_EARTHDATA_USER }}
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WRADLIB_EARTHDATA_PASS: ${{ secrets.WRADLIB_EARTHDATA_PASS }}
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run: |
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export WRADLIB_DATA=`realpath $WRADLIB_DATA`
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pytest -n auto --verbose --durations=15 --pyargs notebooks
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- name: Commit files
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if: github.event_name == 'workflow_dispatch'
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run: |
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git config --global user.email "[email protected]"
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git config --global user.name "wradlib-docs-bot"
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git checkout --orphan render
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git add --all .
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git commit -m "Rendering at commit $GITHUB_SHA"
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- name: Push changes
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if: github.event_name == 'workflow_dispatch'
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run: |
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if [ $WRADLIB_TAG == 'undefined' ]; then
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BRANCH=devel
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else
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BRANCH=$WRADLIB_TAG
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fi
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git push https://${{ secrets.GITHUB_TOKEN }}@github.com/wradlib/wradlib-notebooks.git render:$BRANCH -fq
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trigger_rtd:
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if: github.event_name == 'workflow_dispatch'
83+
needs: [build_0]
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name: trigger readthedocs
85+
runs-on: ubuntu-latest
86+
defaults:
87+
run:
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shell: bash -l {0}
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env:
90+
RTD_TOKEN: ${{ secrets.RTD_TOKEN }}
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RTD_URL: ${{ secrets.RTD_URL }}
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steps:
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- name: trigger readthedocs
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run: |
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curl -X POST -d "token=$RTD_TOKEN" "$RTD_URL"

‎.gitignore‎

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# Ignore everything
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*
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# whitelist notebooks, png and shell
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!*.ipynb
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!*.png
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!*.sh
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# whitelist scripts
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!scripts/
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!/scripts/*
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# whitelist notebooks
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!notebooks/
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#!/notebooks/**
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# whitelist .dask
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!.dask/
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!/.dask/*
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# whitelist ci
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!ci/
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# whitelist binder
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!binder/
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!/binder/*
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# Whitelist root files
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!.gitignore
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!conftest.py
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!README.md
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!LICENSE.txt
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!Welcome_Pangeo.md
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# blacklist standard notebook copies
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*-Copy*.ipynb
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# blacklist checkpoints
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*checkpoint*

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