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README.md

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@@ -50,7 +50,7 @@ man ./longcallD.1
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- [Usage](#usage)
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- [Variant calling with PacBio HiFi/Nanopore long reads](#variant-calling-with-pacbio-hifinanopore-long-reads)
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- [Multiple input BAM/CRAM files of the same sample](#multiple-input-bamcram-files-of-the-same-sample)
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- [Low allele-fraction mosaic variant calling](#low-allele-fraction-mosaic-variant-calling)
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- [Low-allele-fraction mosaic variant calling](#low-allele-fraction-mosaic-variant-calling)
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- [Region-specific variant calling](#region-specific-variant-calling)
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- [Output phased (\& refined) long-read BAM/CRAM](#output-phased--refined-long-read-bamcram)
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- [Variant calling from remote files](#variant-calling-from-remote-files)
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longcallD call -t16 ref.fa sample_part1.bam -X sample_part2.bam -X sample_part3.bam > sample.vcf
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```
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### Low allele-fraction mosaic variant calling
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With `-s`, longcallD will detect both germline and low-fraction somatic/mosaic variants.
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### Low-allele-fraction mosaic variant calling
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With `-s`, longcallD will detect both germline and low-allele-fraction somatic/mosaic variants.
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For each somatic/mosaic variant, a `SOMATIC` tag will be added to the INFO field in the output VCF.
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```

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