Error in svd(X) : infinite or missing values in 'x' #5
Description
Hi, Zhang Yun,
when I used my data via FUNNEL.GSEA, I don't know what's problem in my data. Can you help me to solve this problem.
my data is at this link .
codes are:
load("xd.RData")
genesets = qusage::read.gmt("c2.cp.kegg.v7.0.symbols.gmt")
t <- c(0,6,30)
Y <- FUNNEL.GSEA(xd, t, genesets)
And it shown me is:
22 real eigenvalues are negative or zero and are removed!
Error in svd(X) : infinite or missing values in 'x'
In addition: Warning messages:
1: In interpp.old(x, y, z, xo, yo, ncp = 0, extrap = FALSE, duplicate = duplicate, :
interpp.old() is deprecated, future versions will only provide interpp()
2: In interpp.old(x, y, z, xo, yo, ncp = 0, extrap = FALSE, duplicate = duplicate, :
interpp.old() is deprecated, future versions will only provide interpp()
3: In sqrt(romb2(out1, phi[, i]^2)) : NaNs produced
When I test whether my data have NA:
table(is.na(xd))
#FALSE
#56496
Thank you!
Your sincerely,
Xiaowei
-email: [email protected]